Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30574
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   3.8  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   6.7  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
 Frame = +3

Query: 384 FSKPFYGTE---FRCLLCSYYDYIFLLQIERNYPFR*LSSSLIFSTRSPKHDEQARAFSF 554
           F  PF G+E   FRCLL  ++  +F L    ++ F    S +     S         F F
Sbjct: 101 FLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFF 160

Query: 555 VNNAPNSTH*CFCCFRS-LFYFFHNIILPLVYNEAIYVVHNFSTLS 689
           +         C C F S LF   H + L +++   +  V  FSTLS
Sbjct: 161 L---------CVCVFLSFLFSLSHLLSLAILFLPLLLRV--FSTLS 195


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 591 CCFRSLFYFFHNIILPLVYNEAIYVVHNFSTLSFEYYT 704
           CC  + F F+  I+LP +Y +  + V +F  ++   YT
Sbjct: 349 CCIFTSFVFWIWIVLPGLYYQNYWQVAHFPIMTNSIYT 386


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +3

Query: 279 QLPIIFCFFFHLKPSSFIIRRKL-HSEPLKCISSLKFSKPFYGTEFRCLLCSYYDYI--- 446
           Q+     FFF     S+II+  + HS   K +S++ FSK  +      LL ++++ I   
Sbjct: 258 QINYFLWFFFFFSFPSYIIKYLMSHSRRSKLLSAV-FSKKSFLIVSVLLLIAHFNTIFHP 316

Query: 447 FLLQIERNYPF 479
           F+L   R+Y F
Sbjct: 317 FILADNRHYLF 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,453
Number of Sequences: 5004
Number of extensions: 58975
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)