Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30574
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)             30   1.8  
SB_6976| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_22425| Best HMM Match : PigN (HMM E-Value=0)                        28   7.1  
SB_52519| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-08)                 28   9.4  
SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)          28   9.4  

>SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)
          Length = 773

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 367 HFNGSE*SLRRIMKELGFRWKKKQKIIG 284
           ++N  E +LR   KEL  RW K +K+IG
Sbjct: 454 NYNDPEEALRNFAKELDKRWLKLEKVIG 481


>SB_6976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 261 HSILRIEYLQKIINYRQKRRSNRPSRKLHR*A-LCRLI 151
           H   RIEY  KIIN R  + S+R  +KL R A +CRL+
Sbjct: 32  HKESRIEYAAKIINTR--KLSSRDLQKLDREARICRLL 67


>SB_22425| Best HMM Match : PigN (HMM E-Value=0)
          Length = 913

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +1

Query: 529 MSKPELLASLIMHLTVLTDVFVASEVCFTFSIISFFPWFIMKQYTSYTIFLPFLLNTTPV 708
           +S  +L  S      ++T  F    +    SI SF P  +   Y   T+F PFL+ T  +
Sbjct: 763 LSLDDLRGSYFFVFFIITAFFGTGNIA---SINSFDPASV---YCFMTVFSPFLMGTLLL 816

Query: 709 CRGIVYFL 732
           C+ +V F+
Sbjct: 817 CKVVVPFV 824


>SB_52519| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-08)
          Length = 304

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 285 PIIFCFFFHLKPSSFIIRRKLHSEPLKCISSLKFSKPFYGTEFRCLLCSY 434
           P+IF     L  ++F+I R L  + +  + +L  S    G  F  ++C+Y
Sbjct: 29  PVIFAMNL-LAIATFLINRHLRKKSIYLVINLAISDALNGAVFSPMMCNY 77


>SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)
          Length = 428

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 625 ISFFPWFIMKQYTSYTIFLPFLLNTTPVCRGIVY 726
           + F+ W  + Q   Y +F+ FL+   P  +G  Y
Sbjct: 358 LEFYGWISLTQCVRYILFVLFLIGNRPHLQGYFY 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,762,708
Number of Sequences: 59808
Number of extensions: 384778
Number of successful extensions: 1466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)