Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30574
(755 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132863-8|CAB60576.2| 519|Caenorhabditis elegans Hypothetical ... 32 0.38
Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z11505-8|CAA77583.2| 489|Caenorhabditis elegans Hypothetical pr... 29 3.6
AY547284-1|AAS49906.1| 489|Caenorhabditis elegans SOCS-box prot... 29 3.6
Z81562-6|CAB04554.1| 211|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z37092-11|CAA85461.2| 334|Caenorhabditis elegans Hypothetical p... 29 4.7
L14429-1|AAA28219.2| 575|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z99281-28|CAB16503.1| 633|Caenorhabditis elegans Hypothetical p... 28 8.2
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 28 8.2
CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical ... 28 8.2
>AL132863-8|CAB60576.2| 519|Caenorhabditis elegans Hypothetical
protein Y37H2A.7 protein.
Length = 519
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 755 VECLLIFYKKYTMPRQTGVVFKRKGRKIVYDVYCFIIN 642
+E L +FY KY+ P GV F+ +G K V Y +N
Sbjct: 474 MEILKVFYPKYSEPLPAGVRFETQGFKFVIGFYLDSVN 511
>Z99278-6|CAD59170.1| 276|Caenorhabditis elegans Hypothetical
protein Y53C12B.5b protein.
Length = 276
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +3
Query: 594 CFRSLFYFFHNIILPLVYNEAIYVVHNFSTLSFEYYTSLSRHSVFFI 734
CF SL F HN+ L LV N I+ L F +T+ S FFI
Sbjct: 152 CFPSLLNFPHNLFLSLVSNSMIFSYF----LEFSLFTNFVIFSNFFI 194
>Z11505-8|CAA77583.2| 489|Caenorhabditis elegans Hypothetical
protein F59B2.6 protein.
Length = 489
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 589 FVASEVCFTFSIISFFPWFIMKQYTSYTIFL-PFL-LNTTP-VCRGIVYFL*KINKHS 753
F+ + CF +SF I+ Q+T +FL PF+ + P V R V F +I+ HS
Sbjct: 204 FIPTSTCFKAKCVSFDMNDIVSQFTGIRVFLDPFVSSHYVPWVYRNDVNFFIRIDSHS 261
>AY547284-1|AAS49906.1| 489|Caenorhabditis elegans SOCS-box protein
ZIF-1 protein.
Length = 489
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 589 FVASEVCFTFSIISFFPWFIMKQYTSYTIFL-PFL-LNTTP-VCRGIVYFL*KINKHS 753
F+ + CF +SF I+ Q+T +FL PF+ + P V R V F +I+ HS
Sbjct: 204 FIPTSTCFKAKCVSFDMNDIVSQFTGIRVFLDPFVSSHYVPWVYRNDVNFFIRIDSHS 261
>Z81562-6|CAB04554.1| 211|Caenorhabditis elegans Hypothetical
protein K03D7.9 protein.
Length = 211
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +3
Query: 231 FEDIRFVVSNVTFFNYQLPIIFCFFFHLKPSSFIIRRKLHSEPLKCISSLKFSKPFYGTE 410
+EDI FVV N FF L F++HL + + +KLHS+ + L P Y +
Sbjct: 89 WEDIAFVVYNFIFFIMTL-TSGLFYYHL----YQLLKKLHSDVIPETQILYRVVPIYSLQ 143
Query: 411 --------FRCLLCSYYDY 443
+C+L YY+Y
Sbjct: 144 VVFTLIALMQCIL-GYYEY 161
>Z37092-11|CAA85461.2| 334|Caenorhabditis elegans Hypothetical
protein F44F4.13 protein.
Length = 334
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 595 ASEVCFTFSIISFFPWFIMKQYTSYTIFLPFLLNTTPVCRGIVYFL 732
+S+ F S+ FF I +T +FL F LN +P+ G+V L
Sbjct: 238 SSQAIFFLSMSQFFACLIYSVFTK--VFLEFQLNLSPLQSGLVLAL 281
>L14429-1|AAA28219.2| 575|Caenorhabditis elegans Hypothetical
protein ZK652.6a protein.
Length = 575
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 396 FYGTEFRCLLCSYYDYIFLLQIERNY 473
F G ++CL CS YD F +NY
Sbjct: 22 FAGNRYKCLRCSDYDLCFSCFTTKNY 47
>Z99281-28|CAB16503.1| 633|Caenorhabditis elegans Hypothetical
protein Y57G11C.1 protein.
Length = 633
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 240 IRFVVSNVTFFNYQLPIIFCFFFHLKPSSFI 332
I +V+N+ F +PI+FC+ + L +SFI
Sbjct: 173 IETLVNNLFMFFGSIPIMFCYSWQLTLTSFI 203
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 633 LPLVYNEAIYVVHNFSTLSFEYYTS---LSRHSVFFIKNQQT 749
LPL +N + ++ F + F Y+TS LS H + +++ T
Sbjct: 647 LPLFWNNSTHLYQYFDSRGFSYFTSPNHLSAHGIELVRHIYT 688
>CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical
protein K09E10.1 protein.
Length = 692
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 633 LPLVYNEAIYVVHNFSTLSFEYYTS---LSRHSVFFIKNQQT 749
LPL +N + ++ F + F Y+TS LS H + +++ T
Sbjct: 644 LPLFWNNSTHLYQYFDSRGFSYFTSPNHLSAHGIELVRHIYT 685
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,374,900
Number of Sequences: 27780
Number of extensions: 314450
Number of successful extensions: 930
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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