Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30574
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   7.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   7.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.1  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/36 (22%), Positives = 21/36 (58%)
 Frame = +3

Query: 237 DIRFVVSNVTFFNYQLPIIFCFFFHLKPSSFIIRRK 344
           +IR  V+ +  F+Y +P+I   +++ +  S ++  +
Sbjct: 207 EIRIFVATIFTFSYCIPMILIIYYYSQIVSHVVNHE 242


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 435 YDYIFLLQIERNYPFR*LSSSLIFSTRSPKHDEQARAFSFVNN 563
           Y Y   +  E+N P      +++     PKHD Q R  S   N
Sbjct: 518 YQYKIAVHSEQNVP-----GAVVRVFLGPKHDHQGRPISISKN 555


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 523 STMSKPELLASLIMHLTVLTDVFVASEVCF 612
           STM+ P  +    M     T + V +EVC+
Sbjct: 136 STMAIPYAVTKSAMFFFAATSLLVVAEVCY 165


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -3

Query: 507 KRSGKKKVTGMDSFVQSVIKRCNHNNYITSSETPYRRKASKILKKIYIL 361
           K   + K   + S + +  K  N+NNY   +   Y     K+  K YI+
Sbjct: 304 KERERSKEPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYII 352


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 618 FHNIILPLVY 647
           FHNII+P VY
Sbjct: 130 FHNIIMPNVY 139


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 618 FHNIILPLVY 647
           FHNII+P VY
Sbjct: 130 FHNIIMPNVY 139


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 600 RSLFYFFHNIILPLV 644
           R+L+YFF N+I+P V
Sbjct: 193 RTLYYFF-NLIVPCV 206


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 600 RSLFYFFHNIILPLV 644
           R+L+YFF N+I+P V
Sbjct: 193 RTLYYFF-NLIVPCV 206


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 600 RSLFYFFHNIILPLV 644
           R+L+YFF N+I+P V
Sbjct: 193 RTLYYFF-NLIVPCV 206


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 600 RSLFYFFHNIILPLV 644
           R+L+YFF N+I+P V
Sbjct: 193 RTLYYFF-NLIVPCV 206


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 600 RSLFYFFHNIILPLV 644
           R+L+YFF N+I+P V
Sbjct: 193 RTLYYFF-NLIVPCV 206


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 600 RSLFYFFHNIILPLV 644
           R+L+YFF N+I+P V
Sbjct: 193 RTLYYFF-NLIVPCV 206


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 450 KRCNHNNYITSSETPYRRKASKILKKIYILMA 355
           KR  HN      E P  ++   +L +I I++A
Sbjct: 359 KRPMHNVVYRPGENPVTQRLPAVLSRIGIILA 390


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 450 KRCNHNNYITSSETPYRRKASKILKKIY 367
           K  N+NNY  +    Y    +   KK+Y
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLY 117


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 450 KRCNHNNYITSSETPYRRKASKILKKIY 367
           K  N+NNY  +    Y    +   KK+Y
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLY 117


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 600 RSLFYFFHNIILPLV 644
           R+L+YFF N+I+P V
Sbjct: 261 RTLYYFF-NLIVPCV 274


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 600 RSLFYFFHNIILPLV 644
           R+L+YFF N+I+P V
Sbjct: 261 RTLYYFF-NLIVPCV 274


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 600 RSLFYFFHNIILPLV 644
           R+L+YFF N+I+P V
Sbjct: 230 RTLYYFF-NLIVPCV 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,519
Number of Sequences: 438
Number of extensions: 4107
Number of successful extensions: 25
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)