Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30574
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23880.1 68414.m03012 NHL repeat-containing protein contains ...    32   0.47 
At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2...    31   1.1  
At1g14430.1 68414.m01711 glyoxal oxidase-related low similarity ...    29   2.5  
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co...    28   5.8  
At5g61300.1 68418.m07692 expressed protein                             28   7.7  

>At1g23880.1 68414.m03012 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 545

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 252 VSNVTFFNYQLPIIFC---FFFHLKPSSFIIR 338
           ++NV+ F   L I+FC   FFF+L PS F +R
Sbjct: 1   MTNVSLFYASLSILFCCFLFFFNLSPSFFFLR 32


>At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2.5)
           plant glutamate receptor family, PMID:11379626
          Length = 829

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 177 VVYDSVGSIFFFVYN*LFFEDIRFVVSNVTFFNYQLPIIFCFFFHLKPSSF 329
           ++ D + S+F+F ++ LFF   R    + +FF   L +++CF   +   S+
Sbjct: 543 MIIDKISSVFYFSFSTLFFAHRR---PSESFFTRVLVVVWCFVLLILTQSY 590


>At1g14430.1 68414.m01711 glyoxal oxidase-related low similarity to
           glyoxal oxidase precursor (glx1) [Phanerochaete
           chrysosporium] GI:1050302
          Length = 849

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 486 LSSSLIFSTRSPKHDEQARAFSFVNNAPNS-TH*CFCCFRSL 608
           LSS+LI+  +   HD + +++ FV  + NS  H C+  F SL
Sbjct: 806 LSSNLIYKQQMVVHDPETKSYDFVFKSKNSGNHVCY--FESL 845


>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 981

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 731 KKYTMPRQTGVVFKRKGRKIVYDVYCFIINQGK-NDIMEKVKQTSEAT 591
           +KY   R TG +F ++  K++  V   +I +GK + + +K+    + T
Sbjct: 452 RKYVDDRVTGYLFPKQNLKVLSQVVLEVITEGKISPLAQKIAMMGKTT 499


>At5g61300.1 68418.m07692 expressed protein
          Length = 557

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 450 KRCNHNNYITSSETPYRRKASKILKKI 370
           KR  HN ++ S  T    KASK+L+KI
Sbjct: 495 KRQQHNEFLPSLSTFNGNKASKVLQKI 521


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,083,247
Number of Sequences: 28952
Number of extensions: 276002
Number of successful extensions: 702
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)