Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30573
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    62   6e-11
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    48   2e-06
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    32   0.078
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    26   6.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   6.8  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +2

Query: 650 VCGHELAHQWFGNLVTMRWWTDLWLNEGFASYIEY 754
           V  HELAHQWFGNLVTM++W  LWLNEGFA+++ +
Sbjct: 313 VVQHELAHQWFGNLVTMQFWDGLWLNEGFATWMSW 347


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = +2

Query: 650 VCGHELAHQWFGNLVTMRWWTDLWLNEGFASYIE 751
           V  HELAH W GNLVT   W   WLNEG   ++E
Sbjct: 291 VIAHELAHSWSGNLVTNESWQCFWLNEGMTVFLE 324


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 665 LAHQWFGNLVTMRWWTDLWLNEGFASYI 748
           LA QW G  +  + W+DLWL  G + YI
Sbjct: 389 LASQWIGVYLIPKAWSDLWLIYGLSYYI 416


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 691 EVPEPLVRELVATDTATFCLSRGIPSTSSYNKDISLAR 578
           ++ E L  +L+ATD A + + +G+P   +++   S  R
Sbjct: 360 KIAESLTPDLLATDLAEYLVRKGLPFRQTHHISGSAVR 397


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 696 PCAGGRTCGSTRGSL 740
           PC  G+TC  T+GSL
Sbjct: 339 PCCDGKTCKLTKGSL 353


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 93  DPGEGAKPSSS*TRHFGFSRSTLNAF 170
           DPGEG KPSS   +   F RS+ N +
Sbjct: 473 DPGEGFKPSSGMIKDLNF-RSSSNVW 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,262,193
Number of Sequences: 5004
Number of extensions: 68495
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)