Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30573
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 74 1e-13
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 73 2e-13
03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670... 50 2e-06
08_02_1605 - 28166338-28166418,28166496-28166567,28166655-281667... 40 0.003
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 29 3.1
01_06_0878 - 32669790-32669846,32670206-32670299,32670384-326704... 29 3.1
02_04_0278 - 21507288-21507726,21507893-21507972,21508587-215088... 28 7.1
05_04_0224 - 19198722-19198835,19198947-19199436,19200478-192006... 28 9.4
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 73.7 bits (173), Expect = 1e-13
Identities = 28/36 (77%), Positives = 31/36 (86%)
Frame = +2
Query: 650 VCGHELAHQWFGNLVTMRWWTDLWLNEGFASYIEYL 757
V HELAHQWFGNLVTM WWT LWLNEGFA+++ YL
Sbjct: 311 VVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYL 346
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 73.3 bits (172), Expect = 2e-13
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +2
Query: 659 HELAHQWFGNLVTMRWWTDLWLNEGFASYIEYLGV 763
HELAHQWFGNLVTM WWT LWLNEGFA+++ YL V
Sbjct: 305 HELAHQWFGNLVTMEWWTHLWLNEGFATWMSYLAV 339
>03_06_0470 +
34164873-34165856,34166335-34166568,34166680-34167006,
34168426-34168716
Length = 611
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2
Query: 650 VCGHELAHQWFGNLVTMRWWTDLWLNEGFASYIE 751
V HELAH W GNL+T + D WLNEGF +Y E
Sbjct: 302 VVAHELAHSWTGNLITNKTNEDFWLNEGFTTYAE 335
>08_02_1605 -
28166338-28166418,28166496-28166567,28166655-28166771,
28166846-28166956,28167077-28167252,28167340-28167421,
28167662-28167808,28167887-28168252,28168558-28168741,
28169104-28169213,28169452-28169508,28169589-28169600,
28169899-28169961,28170010-28170057,28170166-28170246,
28170326-28170389,28170661-28170686,28170782-28170868,
28170942-28170969,28171194-28171255,28171364-28171576,
28171667-28171774,28171948-28172022,28172136-28172249,
28172597-28172644,28172688-28172767,28172974-28173049,
28173287-28173427,28173685-28173762,28175100-28175204,
28177061-28177147,28177287-28178579
Length = 1463
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = +2
Query: 647 GVCGHELAHQWFGNLVTMRWWTDLWLNEGFASY 745
GV GHE H W GN VT R W L L EG +
Sbjct: 860 GVVGHEYFHNWTGNRVTCRDWFQLTLKEGLTVF 892
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 659 HELAHQWFGNLVTMRWWTDLWLNEGFASYI 748
+ LA QWFG TD WL +G A ++
Sbjct: 500 YALARQWFGIYTNAEEATDEWLLDGLAGFL 529
>01_06_0878 -
32669790-32669846,32670206-32670299,32670384-32670499,
32670786-32671096,32672243-32672364,32672754-32672870,
32672982-32673054,32673416-32673542,32673659-32673727,
32673811-32674170,32674493-32674633
Length = 528
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +1
Query: 13 HDPHHSSLLVIYVTIILLSWPPLTT---YPTQARGQSRHH 123
+DPHH+ L V+ + WPP ++ YP G++ +H
Sbjct: 217 YDPHHNLLCVVAGCKKVTLWPPSSSPYLYPMPVYGEASNH 256
>02_04_0278 -
21507288-21507726,21507893-21507972,21508587-21508840,
21508988-21509180
Length = 321
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 60 PPIVAAANYIPDPGEGAKPSSS*TRHFGFSRSTLNAF 170
P + AA +P PG G+ PSSS FG R F
Sbjct: 269 PAAITAAAAVPSPGAGSPPSSS-AALFGARRPHFGPF 304
>05_04_0224 -
19198722-19198835,19198947-19199436,19200478-19200641,
19202534-19202632,19204069-19204175,19204278-19204401,
19205113-19205242,19205314-19205433,19205861-19206002,
19207243-19207326,19207651-19207742,19207855-19207944,
19208057-19208136,19208312-19208451,19208587-19209067
Length = 818
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 19 PHHSSLLVIYVTIILLSWPPLTTYPTQARGQSRHHPKHVISGS 147
PH SLL+ + LS PPL PT + H H++ G+
Sbjct: 2 PHSLSLLLAPSRALSLSSPPLRLAPTHPPLRLHHDGGHLLVGT 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,005,945
Number of Sequences: 37544
Number of extensions: 519159
Number of successful extensions: 1257
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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