Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30573
(769 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 79 5e-15
SB_28575| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-07) 77 1e-14
SB_41061| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 66 4e-11
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 54 2e-07
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07) 49 5e-06
SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041) 35 0.063
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_54897| Best HMM Match : DUF161 (HMM E-Value=4.6) 31 0.77
SB_4216| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16) 29 3.1
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42) 29 5.5
SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08) 28 7.2
SB_56029| Best HMM Match : SEA (HMM E-Value=4.7) 28 9.5
>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 1240
Score = 78.6 bits (185), Expect = 5e-15
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = +2
Query: 650 VCGHELAHQWFGNLVTMRWWTDLWLNEGFASYIEYLGV 763
V HELAHQWFGNLVTM+WW DLWLNEGFAS++E +GV
Sbjct: 612 VVAHELAHQWFGNLVTMKWWNDLWLNEGFASFVENIGV 649
>SB_28575| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-07)
Length = 287
Score = 77.4 bits (182), Expect = 1e-14
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +2
Query: 659 HELAHQWFGNLVTMRWWTDLWLNEGFASYIEYLGV 763
HELAHQWFGNLVTM WW DLWLNEGFASY+ YLG+
Sbjct: 79 HELAHQWFGNLVTMTWWDDLWLNEGFASYVWYLGL 113
>SB_41061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 70.1 bits (164), Expect = 2e-12
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 650 VCGHELAHQWFGNLVTMRWWTDLWLNEGFASYIEY 754
V HEL HQWFGN+VT++WW D+WLNEGFA + EY
Sbjct: 44 VIAHELVHQWFGNIVTLKWWNDMWLNEGFAKFFEY 78
>SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 791
Score = 65.7 bits (153), Expect = 4e-11
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = +2
Query: 659 HELAHQWFGNLVTMRWWTDLWLNEGFASYIEY 754
HE+AH WFGNLVTM WW DLWLNE FA Y Y
Sbjct: 306 HEIAHMWFGNLVTMSWWDDLWLNEAFADYYNY 337
>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 890
Score = 53.6 bits (123), Expect = 2e-07
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +2
Query: 674 QWFGNLVTMRWWTDLWLNEGFASYIEYLG 760
+WFGN+VTM WW DLWLNE FA+ + Y G
Sbjct: 314 KWFGNIVTMAWWDDLWLNEAFATLMAYKG 342
>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
Length = 1844
Score = 48.8 bits (111), Expect = 5e-06
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 659 HELAHQWFGNLVTMRWWTDLWLNEGFASYIE 751
HE++H WFG L+ + WT+ WL+EGF++YIE
Sbjct: 1540 HEISHAWFGLLIGAKDWTEEWLSEGFSTYIE 1570
>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
Length = 999
Score = 35.1 bits (77), Expect = 0.063
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 650 VCGHELAHQWFGNLVTMRWWTDLWLNEGFASYIEYLGV 763
V LA Q+FG + M+ W+D WL G A Y+ L V
Sbjct: 227 VLAQALAEQFFGCYICMQDWSDAWLCSGIAGYLYSLYV 264
>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 4 RPGHDPHHSSLLVIYVTIILLSWPPLTTYPTQARGQSRHHPKH 132
R H PHH +I + II+ + P +T +Q + RHHP H
Sbjct: 257 RHHHHPHHHHSAIITIHIIITAQSPPSTSSSQ---RHRHHPHH 296
Score = 31.9 bits (69), Expect = 0.59
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 4 RPGHDPHHSSLLVIYVTIILLSWPPLTTYPTQARGQSRHHPKH 132
R H PHH +I + II+ + P +T TQ + HHP H
Sbjct: 749 RHHHHPHHQHSAIITIHIIITAPSPPSTSSTQ---RYHHHPHH 788
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 4 RPGHDPHHSSLLVIYVTIILLSWPPLTTYPTQARGQSRHHPKH 132
R H PHH +I + II+ P +T +Q + HHP H
Sbjct: 289 RHRHHPHHHHSAIITIHIIITVPSPPSTSSSQ---RHHHHPHH 328
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 7 PGHDPHHSSLLVIYVTIILLSWPPLTTYPTQARGQSRHHPKH 132
P H HHS++ I++ II + PP T + + HHP H
Sbjct: 358 PHHHSHHSAITNIHI-IITVPSPP----STSSSQRHHHHPHH 394
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 13 HDPHHSSLLVIYVTIILLSWPPLTTYPTQARGQSRHHPKHVIS 141
H HH S ++ II PP T+ + R HH +I+
Sbjct: 261 HPHHHHSAIITIHIIITAQSPPSTSSSQRHRHHPHHHHSAIIT 303
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 7 PGHDPHHSSLLVIYVTIILLSWPPLTTYPTQARGQSRHHPKHVIS 141
P H HHS++ I++ II PP T+ + HH +I+
Sbjct: 424 PHHHSHHSAITNIHI-IITAPSPPSTSSSQRHHHHPHHHHSAIIT 467
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 4 RPGHDPHHSSLLVIYVTIILLSWPPLTTYPTQARGQSRHHPKH 132
R H PHH + + II+ + P +T +Q + HHP H
Sbjct: 617 RHHHHPHHHHSAITTIHIIITAPSPPSTSSSQ---RHHHHPHH 656
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 4 RPGHDPHHSSLLVIYVTIILLSWPPLTTYPTQARGQSRHHPKH 132
R H PHH + + II+ + P +T +Q + HHP H
Sbjct: 649 RHHHHPHHYHSAITTINIIITAPSPPSTSSSQ---RHHHHPYH 688
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 13 HDPHHSSLLVIYVTIILLSWPPLTTYPTQARGQSRHHPKH 132
H PHH + + II+ + P +T +Q + HHP H
Sbjct: 66 HHPHHHHSAITTIHIIITAPSPPSTSSSQ---RHHHHPHH 102
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 13 HDPHHSSLLVIYVTIILLSWPPLTTYPTQARGQSRHHPKH 132
H PHH + + II+ + P +T +Q + HHP H
Sbjct: 228 HHPHHHHSAITTIHIIITAPSPPSTSSSQ---RHHHHPHH 264
>SB_54897| Best HMM Match : DUF161 (HMM E-Value=4.6)
Length = 375
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 37 LVIYVTIILLSWPPLTTYPTQARGQSRHHPKHVISGSLDPLSMLFSVLIKIIMSLCLIXM 216
++I TII+ PPL+ Y + Q HH KH + + +++IKII S+ ++
Sbjct: 24 VIIVTTIIITKSPPLSLY--RYYQQRHHHYKHTTK-----IDITTTIIIKIINSIIIVTT 76
Query: 217 S 219
S
Sbjct: 77 S 77
>SB_4216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 222 KLVSQSC*CLRLRTYLNIRAMSAFIRL 302
K +++C C+ LRT LNIRA A RL
Sbjct: 112 KKATKTCKCMALRTVLNIRAKKALKRL 138
>SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)
Length = 600
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -1
Query: 718 QVRPPAHGDEVPE 680
++RPPAHGDE PE
Sbjct: 159 EIRPPAHGDEKPE 171
>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 704
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 513 WYLPVRTPNRSYHQYTMLVHNVRAREISL 599
W PV P R + Q+T +H++RA+ SL
Sbjct: 257 WKEPVFPPLRRHEQFTRSLHDIRAKRDSL 285
>SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42)
Length = 1264
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 31 SLLVIYVTIILLSWPPLTTYPTQARGQSRHHPKH 132
++++IY+TII ++ +TT P + QS HH +H
Sbjct: 1108 AIIIIYITIINITAITITT-PKASLPQSPHHHQH 1140
>SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +3
Query: 234 QSC*CLRLRTYLNIRAMSAFIRLCVN 311
++C C+ +R+YL+ + +I++CVN
Sbjct: 493 ETCECILMRSYLSTKCGLYYIQMCVN 518
>SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)
Length = 836
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -2
Query: 750 SMYEANPSLSHRSVHQRMVTRFPNHWCASSWPQTPQRFACRAVSLPLRRT-TKIFP-WHG 577
S + +NP S+ +HQ+++ P+ W S P + R R V P + ++ P W G
Sbjct: 555 SHFHSNPDYSYFEMHQKII---PSKWLLSRQPLSEWRNVHREVRAPENQVRLQVLPYWDG 611
>SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)
Length = 111
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 425 YKS*SLRYSYNGCPTLQ 475
YK+ SLRYSY GC L+
Sbjct: 39 YKNSSLRYSYTGCEVLR 55
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,606,148
Number of Sequences: 59808
Number of extensions: 560430
Number of successful extensions: 1631
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -