Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30573
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    74   1e-13
At5g13520.1 68418.m01561 peptidase M1 family protein similar to ...    44   8e-05
At1g63770.2 68414.m07216 peptidase M1 family protein similar to ...    39   0.003
At1g63770.1 68414.m07217 peptidase M1 family protein similar to ...    39   0.003
At5g35753.1 68418.m04282 expressed protein                             29   2.6  
At5g19840.1 68418.m02357 transcription factor jumonji (jmjC) dom...    29   2.6  
At2g40920.1 68415.m05050 F-box family protein contains Pfam PF00...    29   4.5  
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi...    29   4.5  

>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = +2

Query: 650 VCGHELAHQWFGNLVTMRWWTDLWLNEGFASYIEYL 757
           V  HELAHQWFGNLVTM WWT LWLNEGFA+++ YL
Sbjct: 304 VVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYL 339


>At5g13520.1 68418.m01561 peptidase M1 family protein similar to
           SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4
           hydrolase) {Homo sapiens}; contains Pfam profile
           PF01433: Peptidase family M1
          Length = 616

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = +2

Query: 650 VCGHELAHQWFGNLVTMRWWTDLWLNEGFASYIE 751
           V  HELAH W GNL+T       WLNEGF +Y E
Sbjct: 306 VVAHELAHSWTGNLITNINNEHFWLNEGFTTYAE 339


>At1g63770.2 68414.m07216 peptidase M1 family protein similar to
           SP|P04825 Aminopeptidase N (EC 3.4.11.2)
           (Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
           contains Pfam profile PF01433: Peptidase family M1
          Length = 945

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = +2

Query: 647 GVCGHELAHQWFGNLVTMRWWTDLWLNEGFASY 745
           GV GHE  H W GN VT R W  L L EG   +
Sbjct: 389 GVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVF 421


>At1g63770.1 68414.m07217 peptidase M1 family protein similar to
           SP|P04825 Aminopeptidase N (EC 3.4.11.2)
           (Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
           contains Pfam profile PF01433: Peptidase family M1
          Length = 918

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = +2

Query: 647 GVCGHELAHQWFGNLVTMRWWTDLWLNEGFASY 745
           GV GHE  H W GN VT R W  L L EG   +
Sbjct: 389 GVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVF 421


>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 522 PVRTPNRSYHQY--TMLVHNVRAREISLLYDEVEGIPR 629
           P+  P+  +H +    L     AR+I  +YDE +G+PR
Sbjct: 358 PITVPDSDFHDFDKNRLEECFEARQIWAIYDEDDGMPR 395


>At5g19840.1 68418.m02357 transcription factor jumonji (jmjC)
           domain-containing protein low similarity to PASS1 [Homo
           sapiens] GI:21591407; contains Pfam profile PF02373:
           jmjC domain
          Length = 505

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 13  HDPHHSSLLVIYVTIILLSWPPLTT---YPTQARGQSRHH 123
           +DPHH+ L V+     ++ WPP  +   YP    G++ +H
Sbjct: 185 YDPHHNLLCVVSGRKKVVLWPPSASPSLYPMPIYGEASNH 224


>At2g40920.1 68415.m05050 F-box family protein contains Pfam
           PF00646: F-box domain; similar to F-box protein family,
           AtFBX8 (GP:20197464) {Arabidopsis
           thaliana}|502017|gb|T20576.1|T20576
          Length = 436

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +1

Query: 61  LLSWPPLTTYPTQARGQSRHHPKHVISGSLDPLSMLFSVLIKIIMSLCL 207
           LL+ P + +     +GQ++HHP++ I    DP+S  + ++  + +S  L
Sbjct: 173 LLTLPAIKSDIVAQQGQTKHHPRYYIGH--DPVSDQYKLVCTVAISSLL 219


>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
           protein associated factor (GI:2827282) [Homo sapiens];
           similar to Transcription initiation factor TFIID 150 kDa
           subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
           [Drosophila melanogaster]
          Length = 1390

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 665 LAHQWFGNLVTMRWWTDLWLNEGFASYI 748
           LA QWFG  +T     D WL +G A ++
Sbjct: 355 LAKQWFGVYITPESPNDDWLLDGLAGFL 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,594,516
Number of Sequences: 28952
Number of extensions: 387709
Number of successful extensions: 888
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)