Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30572
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   1.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.8  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.8  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 428 CSCCSGWPGCACS 466
           C+C +GW G  CS
Sbjct: 130 CNCKNGWKGKTCS 142



 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
 Frame = +2

Query: 404 SG*TCVGR-----CSCCSGWPGCACS 466
           +G TCV +     C C  GW G  C+
Sbjct: 79  NGGTCVDKINAFQCICKEGWEGALCN 104


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 468 GEHAQPGHPEQHEQRPTQVH 409
           G H Q  HP+ H+    Q H
Sbjct: 168 GHHMQEQHPQHHQPHHQQQH 187


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 503  HLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGS-SAYFSTSS 372
            H G+    + +PAS     T  +TN D++     G+ S+ F + S
Sbjct: 926  HAGSPCRNSASPASSDRSGTPRSTNGDRKPGGSLGALSSMFDSLS 970


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 468 GEHAQPGHPEQHEQRPTQVH 409
           G H Q  HP+ H+    Q H
Sbjct: 170 GHHMQEQHPQHHQPHHQQQH 189


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 511 PNPGHGTNSVLWSDWSWSMPSNHK 582
           P  GH  +SV+W      +P N K
Sbjct: 533 PFAGHPVDSVVWERDGRQLPINRK 556


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 406 WVNLRWSLFVLFW 444
           W+NL W+ + L W
Sbjct: 55  WLNLEWNDYNLKW 67


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 406 WVNLRWSLFVLFW 444
           W+NL W+ + L W
Sbjct: 55  WLNLEWNDYNLKW 67


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 406 WVNLRWSLFVLFW 444
           W+NL W+ + L W
Sbjct: 55  WLNLEWNDYNLKW 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,648
Number of Sequences: 336
Number of extensions: 3365
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)