Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30572
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    30   0.28 
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   2.0  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    26   4.6  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    26   6.0  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   8.0  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    25   8.0  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.0  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 455 SQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSSIFASPFLWSPTTYFA 285
           S  T   T +     T   SS Y+S SS+++P       S S F+S    SPT+ F+
Sbjct: 488 SNTTVTFTGTGTGSATATSSSPYYSNSSIIVPTTVSTSGSVSSFSSS--PSPTSSFS 542


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 187 EVRFGRPEFCIRFWYSLVGCNVF-ILFHLPSINRET 83
           EV  G P      W+SL GC VF  LF  P  N ET
Sbjct: 867 EVILGNPGIKASDWWSL-GCVVFEFLFGYPPFNAET 901


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 192 LPRFVLDDRNSVSDSGIAL*VATCSSSFTCPPSIERRFFRGSD 64
           L  F   D   +SD   AL V T +++FTCP S +    +G D
Sbjct: 298 LGNFSSIDMPDLSDVKGALTVETKATNFTCPWSNDDSVIKGDD 340


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 433 VLFWVAWLCMLAGAIAVI 486
           VL W AWLC  +G +  +
Sbjct: 278 VLIWFAWLCFNSGTLLTV 295


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 343 NKRQFTGMTREEVLKYADDPFWVNLRWSLFVL 438
           N     G+TREE+  YA+      + WS++ +
Sbjct: 318 NNNPDDGLTREEMAPYAERVLVYPVNWSVYTM 349


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 349 RQFTGMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIV 489
           R  +  T EE  +   +    +L W++ ++ W  WL + A  + +IV
Sbjct: 467 RVVSDSTNEETGQLIRETHDYSLGWTMTIVTWAIWLFLTALNLLLIV 513


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 21/77 (27%), Positives = 37/77 (48%)
 Frame = -3

Query: 500 LGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSSIFA 321
           L A +   I+ +S+    T ++T+        + SS+YF TSS   P +    +SSS  +
Sbjct: 108 LQACSTCTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSS 167

Query: 320 SPFLWSPTTYFASDMST 270
           S    S ++  +S  S+
Sbjct: 168 SSSKSSSSSKSSSSSSS 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,323
Number of Sequences: 5004
Number of extensions: 54758
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)