Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30572
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0041 - 25120961-25121005,25121143-25121194,25121429-251214... 30 1.6
02_05_0015 - 24992253-24993993,24995331-24995695 29 3.6
08_02_0523 + 18150425-18150629,18150822-18150881,18150882-181509... 29 4.8
10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 28 6.3
01_01_0185 - 1570942-1571178,1571525-1571656,1571737-1571816,157... 28 6.3
08_02_1269 + 25755256-25756203 28 8.3
08_01_0196 - 1619165-1619605,1620393-1620677,1621040-1621144 28 8.3
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 28 8.3
>05_06_0041 -
25120961-25121005,25121143-25121194,25121429-25121496,
25122167-25122220,25122473-25122541,25122655-25122714,
25122876-25123048,25123847-25123920,25124472-25124585,
25124688-25124754,25124840-25124904,25125504-25125583,
25125689-25125733,25126235-25126300,25126746-25126901,
25127292-25127516,25127630-25127672,25127997-25128040,
25128191-25128263,25130335-25130414
Length = 550
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 151 FWYSLVGCNVFILFHLPSINRETVFPWL 68
F Y ++ C+ FIL H N T++PW+
Sbjct: 301 FSYYMMICSSFILNHTQETNEWTIYPWI 328
>02_05_0015 - 24992253-24993993,24995331-24995695
Length = 701
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 286 AKYVVGDHRNGDAKIELDANKRQFTGMTREEVLKYADDPFWVN 414
AK V+ + GD + K T + RE V YADDP N
Sbjct: 531 AKKVLTMNPTGDLSSARFSEKNLLTAIDREAVFSYADDPCSAN 573
>08_02_0523 +
18150425-18150629,18150822-18150881,18150882-18150967,
18151802-18151948,18152712-18152835,18152990-18153366
Length = 332
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 416 CVGRC-SCCSGWPGCACSPGLLQSLYAL 496
C+ C +CC GW C P L++ +AL
Sbjct: 235 CLAGCRNCCYGWGVLDCLPASLEACFAL 262
>10_08_0749 -
20282982-20283632,20284081-20284141,20284828-20284872,
20285293-20285672,20286382-20287050
Length = 601
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 456 QPGHPEQHEQRPTQVHPERIVSILQYLLSRH 364
Q G E H RP + PER VSIL+ L H
Sbjct: 316 QAGMLESHPWRPQRGLPERAVSILRAWLFEH 346
>01_01_0185 -
1570942-1571178,1571525-1571656,1571737-1571816,
1571919-1572048,1572136-1572268,1572376-1572497,
1572612-1572749,1572898-1572918,1573493-1573678,
1574576-1574713,1575068-1575532
Length = 593
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 510 AAALGSAYNDCNSPGEHAQPGHPEQHEQRPTQVHPER 400
AAA SAY+D + + AQ PE ++P P++
Sbjct: 94 AAATASAYSDDDDDSDEAQATRPEGEVKKPKVKKPKK 130
>08_02_1269 + 25755256-25756203
Length = 315
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 496 PKCGRPNPGHGTNSVLWSDWSWSMPSNHKIY 588
P+C + G W+ WS S P N KIY
Sbjct: 227 PRCSYNHAGLAGVMAQWNRWSASYPYNGKIY 257
>08_01_0196 - 1619165-1619605,1620393-1620677,1621040-1621144
Length = 276
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 527 PCP-GFGRPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSA 390
PCP G+P G R A APA AT +S +R+ +G A
Sbjct: 133 PCPISRGQPGAGGRQPAAAAPAPRGLLATAVARSSGKREAVSRGVGA 179
>02_01_0041 +
279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 497 GARTMTA-IAPASMHSQATQNNTNSDQRKFTQKGSSAYFST 378
G++++TA + + NT++ Q++ Q GSSA+ ST
Sbjct: 147 GSQSLTAEVTDQDFFGGTSDQNTDTQQQQLEQSGSSAFDST 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,131,038
Number of Sequences: 37544
Number of extensions: 397134
Number of successful extensions: 1274
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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