Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30572
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       30   2.1  
SB_16688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)                   29   3.7  
SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)              29   3.7  
SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 28   8.5  
SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)       28   8.5  
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      28   8.5  
SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 28   8.5  
SB_6064| Best HMM Match : DDHD (HMM E-Value=8e-05)                     28   8.5  

>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 438 QHEQRPTQVHPERIVSI-LQYLLSRHPSELPFISIEFNLRVTIPVVPDDI 292
           Q+ +  T V P+R +S+ L YL+++ P + PF      L V++PV  D +
Sbjct: 301 QNPRLRTSVRPKRPLSVMLSYLMNKWPVKSPFTGEAQELCVSVPVGFDSL 350


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 422 GRCSCCSGWPGCACSPGLLQSLYALPSAA 508
           GRCSC +GW G +C+       Y +   A
Sbjct: 685 GRCSCGTGWTGPSCNASCSAGRYGINCVA 713


>SB_16688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 530 VPCPGFGRPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSA 390
           +P  GFGRP  G+R+MT   P++M    +   +   ++ F  K S +
Sbjct: 29  LPKSGFGRPPSGSRSMT---PSAMSKSISLTGSPITRKSFDDKNSES 72


>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
          Length = 300

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = +2

Query: 422 GRCSCCSGWPG--CACSPG 472
           G C C  GW G  C CSPG
Sbjct: 245 GTCQCKPGWTGIDCECSPG 263


>SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 425 RCSCCSGWPGCACSPG 472
           RC+C SGW G +C  G
Sbjct: 68  RCNCMSGWQGLSCEVG 83


>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
          Length = 618

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 373 EEVLKYADDPFWVNLRWSLF--VLFWVAWLCMLAGAIAVIVRA 495
           E +LKY D+       W     V F++A LC +AG +AV+ +A
Sbjct: 347 ECLLKYTDNVIGTFKYWFFIHSVFFFLAILCSIAGWVAVVSKA 389


>SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 422 GRCSCCSGWPGCACS 466
           GRC C  GW G ACS
Sbjct: 374 GRCDCKPGWYGSACS 388


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 1    VKGLLSRSEKLVLRV*YTINDVGATEKPSLD*W 99
            V+ LL   E+LVLR  Y   D+GA  +  L+ W
Sbjct: 2137 VQALLETGEQLVLRGHYAERDIGAKSQMLLELW 2169


>SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 512

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 442 WVAW-LCMLAGAIAVIVRAPKCGRPNPGHG 528
           W +W LC      AV+ R  +C  P P +G
Sbjct: 218 WTSWSLCSKTCGGAVVTRTRECNSPEPSNG 247


>SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)
          Length = 573

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 386 FSTSSLVIPVNCRLLASSSIFASPFLW 306
           F    L   VNCR ++S ++F+ PF W
Sbjct: 331 FILMQLFNEVNCRRVSSRNVFSGPFDW 357


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 395  TILSG*T-CVGRCSCCSGWPGCACSPGL-LQSLY--ALPSAAARTQD 523
            TILS  T C  RC   S W GCA   G  L + Y  ALP +  +T D
Sbjct: 1631 TILSTDTKCAKRCG--SAWTGCAALSGASLTTSYSCALPLSTTKTYD 1675


>SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 468

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 442 WVAW-LCMLAGAIAVIVRAPKCGRPNPGHG 528
           W +W LC      AV+ R  +C  P P +G
Sbjct: 174 WTSWSLCSKTCGGAVVTRTRECNSPEPSNG 203


>SB_6064| Best HMM Match : DDHD (HMM E-Value=8e-05)
          Length = 295

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 268 RVDMSDAKYVVGD-HRNGDAKIELDANKRQFTGMTREEVLKYA 393
           RV++S A+  V +      ++IE D N+R   G T E+V +YA
Sbjct: 140 RVELSKARSKVMELEAKLKSQIEFDQNRRGENGSTAEDVCQYA 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,789,295
Number of Sequences: 59808
Number of extensions: 459735
Number of successful extensions: 1495
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)