Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30572
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical pr...    72   5e-13
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    52   4e-07
AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical ...    35   0.049
AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine re...    31   1.1  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine re...    29   4.3  
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z49131-6|CAA88979.1|  297|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    28   5.7  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    28   5.7  
U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81581-4|CAB04663.2|  568|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro...    27   9.9  
U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family...    27   9.9  
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical...    27   9.9  
AC006632-6|AAK85469.2|  123|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical
           protein F26D10.9a protein.
          Length = 613

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 28/48 (58%), Positives = 39/48 (81%)
 Frame = +1

Query: 361 GMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIVRAPKC 504
           G+T+E++ KY +DPFW  +R  LFVLFW+AW+ M AGAIA++V +PKC
Sbjct: 43  GLTKEQLEKYRNDPFWKPVRTILFVLFWLAWVLMFAGAIAIVVLSPKC 90


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +1

Query: 361 GMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIVRAPKCG-RPNPGHGTNS 537
           G++ +E+ ++ +DP W  +R  LFVLFW+ WL + A AI ++  +P C  R  P     +
Sbjct: 78  GLSEQELEQFRNDPCWKFIRTVLFVLFWLIWLALFAVAILLVCFSPTCVLRAKPNWWQTA 137

Query: 538 VLWSDW 555
           V +  W
Sbjct: 138 VAYHVW 143


>AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical
           protein R01B10.3 protein.
          Length = 98

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 361 GMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIV 489
           G + +E+    ++P W   R++   +FW  W  +LAG+I +IV
Sbjct: 35  GYSLDELNAKREEPKWRVARYTAIAMFWGIWGALLAGSILIIV 77


>AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 59 protein.
          Length = 315

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 220 AVGRYLLLRFAEVRFGRPEFCIRFWYSLVGCNVFILFHLPSI 95
           +V R L + FA  +F R  FC R WY  +G ++F+  HLP +
Sbjct: 120 SVHRILTVMFAG-KFER--FCYR-WYPAIGISMFVYSHLPKL 157


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 441 EQHEQRPTQVHPERIVSILQYLLSRHPSELPFISIEFNLRV 319
           ++H Q P +   E++  I  Y   +HP  LP   +EF LR+
Sbjct: 57  QEHPQNPEEPVVEKVFRISLYPAGQHP--LPVQKVEFKLRL 95


>AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 60 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 163 FCIRFWYSLVGCNVFILFHLPSI 95
           FC R WY  +G ++F+  HLP +
Sbjct: 136 FCYR-WYPAIGISMFVYSHLPKL 157


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical protein
            R09A8.1 protein.
          Length = 1095

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 491  RTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSSIFAS 318
            RT +A+  A   +  ++    SD+  F+Q+ +  +  T  + +P+   L +SSSI A+
Sbjct: 848  RTKSAVTTAC--TSTSKQAARSDEPFFSQRDTRQHSYTQRVQVPIGAALHSSSSIAAN 903


>Z49131-6|CAA88979.1|  297|Caenorhabditis elegans Hypothetical
           protein ZC373.7 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 182 SFWTTGILYQILV*PCRLQRVHPLSLALHQSRDGFSVAP 66
           S WT  +  QILV P    RV+P +    Q R  FS  P
Sbjct: 53  SAWTEMMDIQILVTPPTKPRVNPFNSVFRQKRQTFSGLP 91


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -2

Query: 471 PGEHAQPGHPEQHEQR---PTQVHPER 400
           P +  QP HP QH+Q    P Q HP++
Sbjct: 520 PQQQQQPQHPHQHQQPASVPMQHHPQQ 546


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +1

Query: 451 WLCMLA-GAIAVIVRAPKC-GRPNPGHGTNSVLWSDWSWSMPSNHKIYNRIWNC*RHSKF 624
           W C+L  G I  +     C GR +   G +     +   +  S     ++ WNC RH+ F
Sbjct: 373 WSCLLTNGTIGCLQEQQLCDGRRDCMSGIDEQC-DNPQGNCSSTRNSCDQTWNCQRHAGF 431

Query: 625 RACS 636
            +CS
Sbjct: 432 ESCS 435


>U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical
           protein K08B5.2 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 405 ERIVSILQYLLSRHPSELPFISIEFNLRVTIPVVPDDIFRIGHVH 271
           E +  +LQYLL         +  +FN+R++ P +P  I +    H
Sbjct: 184 ETVSKVLQYLLENEIYLTKCVKAKFNVRLSSPDIPHLIMKFIECH 228


>Z81581-4|CAB04663.2|  568|Caenorhabditis elegans Hypothetical
           protein T02E1.2 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 95  DGGQVKEDEHVATYKAIPESDTE 163
           DG  V+EDE +  ++ +P  DTE
Sbjct: 123 DGNPVEEDEEMPAHEDLPSEDTE 145


>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
           preproprotein protein.
          Length = 1042

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 413 TCVGRCSCCSGWPGCAC 463
           T   RC C +GW G AC
Sbjct: 682 TTTARCVCFNGWSGVAC 698


>U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family
           protein 9 protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 394 DDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIVRAPKCGRPNPGHGTNSVLW 546
           D+P +V    +   L  +  LC++   +A++V    C +   GH  +S+ W
Sbjct: 510 DNPAFVLHSTTALTLLILIILCLIFTMLAILVCRKFCEKWKTGHRRSSICW 560


>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y37D8A.13 protein.
          Length = 1042

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 413 TCVGRCSCCSGWPGCAC 463
           T   RC C +GW G AC
Sbjct: 682 TTTARCVCFNGWSGVAC 698


>AC006632-6|AAK85469.2|  123|Caenorhabditis elegans Hypothetical
           protein F28A10.3 protein.
          Length = 123

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 376 EVLKYADDPFWVNLRWSLFVLFWVAWLC-----MLAGAIAVIVRAPKCGRP 513
           +V K+ DD    N   S+  L W AW+C     ++AG+ A+ V     GRP
Sbjct: 59  DVKKFNDDNAKFN-NISILKLGWSAWMCVASAVLMAGSAALAVLIGLFGRP 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,799,791
Number of Sequences: 27780
Number of extensions: 327044
Number of successful extensions: 1346
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)