Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30572
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38470.1 68415.m04725 WRKY family transcription factor contai...    34   0.11 
At4g30430.1 68417.m04322 senescence-associated family protein si...    31   0.98 
At1g74010.1 68414.m08571 strictosidine synthase family protein s...    29   3.0  
At1g21320.1 68414.m02664 VQ motif-containing protein contains PF...    28   6.9  
At1g53460.1 68414.m06060 expressed protein                             27   9.2  
At1g27870.1 68414.m03415 hypothetical protein                          27   9.2  

>At2g38470.1 68415.m04725 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain;
          Length = 519

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = -3

Query: 464 SMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSSIFASPFLWSPTTYFA 285
           +M +  T+ N N       Q G ++  S   L IP   R  A SSI  SP L SP+T F+
Sbjct: 7   TMDNSRTRQNMNGSANWSQQSGRTSTSSLEDLEIP-KFRSFAPSSISISPSLVSPSTCFS 65

Query: 284 SDM 276
             +
Sbjct: 66  PSL 68


>At4g30430.1 68417.m04322 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 272

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = +1

Query: 415 LRWS-LFVLFWVAWLCMLAGAIAVIVRAPKCGRPNPGHGTNSV---LWSDWSWSMPSNHK 582
           L WS LFV+F++  + +     A +V +   G    G          +SDW     +N K
Sbjct: 71  LLWSYLFVMFFLILIVLCFTIFAFVVTSKGSGETIQGKAYKEYRLEAYSDWLQRRVNNAK 130

Query: 583 IYNRIWNC*RHSKF 624
            +N I +C   SKF
Sbjct: 131 HWNSIRSCLYESKF 144


>At1g74010.1 68414.m08571 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]; contains strictosidine synthase
           domain PF03088
          Length = 325

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 25/80 (31%), Positives = 36/80 (45%)
 Frame = +1

Query: 274 DMSDAKYVVGDHRNGDAKIELDANKRQFTGMTREEVLKYADDPFWVNLRWSLFVLFWVAW 453
           D S  K  V D R+G      D+    +TG++  ++LKY     +V+    +      AW
Sbjct: 23  DASFQKLPVPDKRSGPESFAFDSTGGFYTGVSGGKILKYVPGKGYVDFA-QITDSSNSAW 81

Query: 454 LCMLAGAIAVIVRAPKCGRP 513
            C   GA+     A KCGRP
Sbjct: 82  -C--NGALGTAF-AGKCGRP 97


>At1g21320.1 68414.m02664 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 235

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -2

Query: 462 HAQPGHPEQHEQRPTQVHPE----RIVSILQYLLSRHPS 358
           H QP  P+ H+Q P+Q  P      I ++   ++  HP+
Sbjct: 38  HPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIHTHPN 76


>At1g53460.1 68414.m06060 expressed protein
          Length = 314

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 199 LRFAEVRFGRPEFCIRFWYSLVGCNVFILFHLPSINRETVF 77
           ++FA  RFG+    I  W S       +LF  PS+ +  VF
Sbjct: 183 VKFAAERFGKDYQEIAKWLSGSDLKKIVLFGCPSLEKRAVF 223


>At1g27870.1 68414.m03415 hypothetical protein
          Length = 213

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 67  GATEKPSLD*WRASERG*TRCNLQG 141
           G  E+ + D WR  ERG  +CN  G
Sbjct: 42  GVREEDNHDRWRRPERGWIKCNFDG 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,927,634
Number of Sequences: 28952
Number of extensions: 300177
Number of successful extensions: 1056
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)