Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30571
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    27   3.9  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    26   5.2  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   5.2  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    26   6.8  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   9.0  

>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +3

Query: 627 TVEAYVAQSLNSLNRLVKLIATVHRT---MLVYHLYVKILL-IVDQTLTD 764
           T E+++AQ +N    L+KL+  + R+     VY L + IL+ ++D+   D
Sbjct: 234 TFESHIAQDINKRFDLIKLLVQIIRSDTKTKVYRLVLAILVNLIDKAPKD 283


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 636 AYVAQSLNSLNRLVKLIATVHRTM-LVYHLYVKILLIVDQTL 758
           AY++   ++L   VK+I+T HR   L   ++++ L+ V  +L
Sbjct: 367 AYISFVASTLQACVKVISTTHREYHLAVFIFIQFLVFVPLSL 408


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
 Frame = -2

Query: 699 DVQLLSISQVDSKNSMTGRHMPPPLLTKPGGQVHSIVR---TGNVGETSHVAGLAHGFNV 529
           D  LL I ++  KN     H+    L    G++ ++VR   +GN  E +    +A G+  
Sbjct: 542 DDLLLEIRRLIRKNE----HVKAAGLALFHGKIENVVRILSSGNELEKTISTAVA-GYIT 596

Query: 528 VQGLTHLKTNRLLLTDNQHRRSILEQ-----IAAYIQCMDFRHILGRIYILLND 382
            QGL++  ++ L    +++  + LE      I AY+   D+R +L  + + L D
Sbjct: 597 SQGLSNFGSDSLWKEMSRNLSTELEDPYLRAIFAYVSNSDWRDVLDEVSLSLKD 650


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -3

Query: 203 SFERSIRHLVHMCCLLNKDLYNFHLYKLLGCHTLNLYGNP 84
           S ++ + H ++  CL+  D++ FH    +  +  NL  +P
Sbjct: 239 SCQKCMEHFLYYGCLIIADIFQFHNIYAMTTNAPNLLQDP 278


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +1

Query: 334 CFIDNICGTTL-IVWFVII 387
           C +  +CG T+ IVW ++I
Sbjct: 347 CIVGQVCGVTITIVWIILI 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,443,887
Number of Sequences: 5004
Number of extensions: 76806
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)