Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30569
(296 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce... 89 2e-19
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 24 4.2
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe... 24 4.2
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 24 5.5
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 24 5.5
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 23 7.3
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 23 7.3
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 23 7.3
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 23 9.6
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 23 9.6
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 23 9.6
>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 56
Score = 88.6 bits (210), Expect = 2e-19
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = +2
Query: 62 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 223
M H N+W+SHPR+YG+GSR C R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 24.2 bits (50), Expect = 4.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 79 LVFSPSQIRTRISVMPI 129
LV+ PSQIR R+S++ +
Sbjct: 26 LVYRPSQIRRRVSLLSL 42
>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 139
Score = 24.2 bits (50), Expect = 4.2
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +1
Query: 103 RTRISVMPILLQQA-WLN--PQVRFEHMQTVLQRV 198
+T +S + LL+ A +N PQ+RFEH + L+RV
Sbjct: 4 KTNLSNITTLLRSARCMNRMPQLRFEHTKGDLKRV 38
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 23.8 bits (49), Expect = 5.5
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 123 HDRDPCPYL 97
H RDPCPY+
Sbjct: 6 HTRDPCPYV 14
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 104 GQGSRSCRSCSNRHGLIRKYGLNICRQC 187
G GS + N+ G + +GLNI RQC
Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQC 311
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 103 RTRISVMPILLQQAW 147
+T + V+P LLQQ+W
Sbjct: 73 KTSVKVVPWLLQQSW 87
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -3
Query: 195 SLKHCLHMFKPYLRIKP 145
S+K C PYL +KP
Sbjct: 54 SMKRCRETIAPYLELKP 70
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 23.4 bits (48), Expect = 7.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 31 SLARNNLIS*NGPRKYLVFSPSQIRTRISVMPILLQQAWLNP 156
SLAR +++ GP K L F + T V L + + ++P
Sbjct: 918 SLARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHP 959
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 156 RIKPCLLEQDRHDRDPCPYLRG*EYQI 76
R P LLE ++ D CP +G YQ+
Sbjct: 438 RSNPTLLEFMQYHIDHCPAEKGETYQL 464
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = -2
Query: 85 IPNICVAHFKKLNCFSLTSNKLD 17
+P +F K+ CF KLD
Sbjct: 680 VPGQAAVYFSKVACFCFEEQKLD 702
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = -2
Query: 85 IPNICVAHFKKLNCFSLTSNKLD 17
+P +F K+ CF KLD
Sbjct: 680 VPGQAAVYFSKVACFCFEEQKLD 702
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,072,691
Number of Sequences: 5004
Number of extensions: 19797
Number of successful extensions: 50
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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