Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30566
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    31   0.14 
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    28   1.00 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.3  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   4.0  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   4.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   4.0  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    26   5.3  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   7.0  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -3

Query: 211 APGNPGLPCFP*VPGKPFSPFIVK-PGRPVGPIGPVSPFSPIRPVKP 74
           AP  P  P     P  P +P +   P RP  P+ P +P  P RP  P
Sbjct: 520 APVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVP 566



 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = -1

Query: 474 PGIPEGP*SPFCPGAPN----PVAPFSP 403
           P +P+ P +P  P AP+    PVAP +P
Sbjct: 587 PSVPQPPVAPVVPEAPSVPQPPVAPVAP 614


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 SYRSYRPTRLNYKRRKRLTRNSWKTW 190
           S+R    T+ NY    RL   SW+TW
Sbjct: 314 SWREITKTKANYDNGIRLENASWRTW 339


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 151  KEKKAYQELMENMGGQDYLVLQDKKAI-KVY 240
            K+KK Y++  EN+G  D L + D + I +VY
Sbjct: 1271 KQKKYYEQYKENLGFFDSLCIGDNECITRVY 1301


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 177 HGKHGRPGLPGAPGQKGDQGLPG 245
           +G+ G  G PG PG    +G PG
Sbjct: 71  YGEEGLNGQPGGPGGGPGEGFPG 93


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 376  WYYWGKRRSRREGGHWVWCT 435
            +YY G  +     GHWVW T
Sbjct: 1071 FYYDGPNKDGLASGHWVWGT 1090


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 189 GRPGLPGAPGQKGDQGLPGLPGNW 260
           G P +P  PG  G    PG PG++
Sbjct: 541 GYPAVPAMPGIPGATAPPGAPGSY 564


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 404 GEKGATGFGAPGQKGDQG 457
           G  GA+G G+ G++GD+G
Sbjct: 171 GAGGASGIGSSGRRGDRG 188


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 340 WWPCQTFITLITLLSFF 290
           WWPC+T +  + L   F
Sbjct: 83  WWPCKTTVVCLILFLLF 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,199
Number of Sequences: 5004
Number of extensions: 45568
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)