Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30566
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    31   0.013
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.7  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   7.7  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   7.7  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   7.7  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 150 KGEKGLPGTHGKHGRPGLPGAPGQKGDQGLPGLPG 254
           +G +G+    G  G  G+ G  G +G QG+ G+PG
Sbjct: 842 QGVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 29.1 bits (62), Expect = 0.038
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 150 KGEKGLPGTHGKHGRPGLPGAPGQKGDQGLPGL 248
           +G +   G  G  G  G+ G  G +G QG+PGL
Sbjct: 845 QGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPGL 877



 Score = 27.9 bits (59), Expect = 0.088
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 12  GLQGLQGEKGDRGSLGEKGDQGFTGRMGEKG 104
           G+QG+Q  +G +G  G +G QG  G  G +G
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQGVQGVQG 873



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 12  GLQGLQGEKGDRGSLGEKGDQGFTG 86
           G+QG+QG +G +G  G +G QG  G
Sbjct: 852 GVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 3   GLPGLQGLQGEKGDRGSLGEKGDQG 77
           G+ G+QG+QG +G +G  G +G  G
Sbjct: 852 GVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 25.4 bits (53), Expect = 0.47
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 499 RRS*LDGLPGRTGPIGPPGQKGDRGYPGRPGLQGEQGMKGNKG 627
           ++S L GL  +    G  G +  +G  G  G+QG QG++G +G
Sbjct: 828 QQSVLQGLGVQGVQQGVQGVQTAQGVQGVQGVQGVQGVQGVQG 870



 Score = 25.4 bits (53), Expect = 0.47
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 517 GLPGRTGPIGPPGQKGDRGYPGRPGLQGEQGMKG 618
           G+ G     G  G +G +G  G  G+QG QG+ G
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 25.0 bits (52), Expect = 0.62
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 517 GLPG-RTGPIGPPGQKGDRGYPGRPGLQGEQGMKGNKG 627
           G+ G + G  G    +G +G  G  G+QG QG++G +G
Sbjct: 836 GVQGVQQGVQGVQTAQGVQGVQGVQGVQGVQGVQGVQG 873



 Score = 25.0 bits (52), Expect = 0.62
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 553 GQKGDRGYPGRPGLQGEQGMKGNKG 627
           G +G +G  G  G+QG QG++G  G
Sbjct: 852 GVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 150 KGEKGLPGTHGKHGRPGLPGAPGQKGDQGLPGL 248
           +G +G+ G  G  G PGL     Q   QG+ G+
Sbjct: 860 QGVQGVQGVQGVQGVPGLLQGVQQVFGQGVQGM 892



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 3   GLPGLQGLQGEKGDRGSL 56
           G+ G+QG+QG +G  G L
Sbjct: 861 GVQGVQGVQGVQGVPGLL 878


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/57 (22%), Positives = 22/57 (38%)
 Frame = +2

Query: 392 KGDRGEKGATGFGAPGQKGDQGPSGIPGLPGEKGDKGDRD*MDYLVEPDRLVRQVRK 562
           +G  G +G TGF    + GD          G + ++ DR    +    D    + +K
Sbjct: 92  RGRGGNRGRTGFNNKNKDGDDNNDYEDNDYGNQDNRNDRRKKTFAAREDNDEEEAQK 148


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 195 PGLPGAPGQKGD 230
           PG PG PG  GD
Sbjct: 332 PGPPGVPGDHGD 343



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 266 PGIPGLPGEKGQKGDQGNE 322
           PG PG+PG+ G    +  E
Sbjct: 332 PGPPGVPGDHGDHAPKQTE 350



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 153 GEKGLPGTHGKH 188
           G  G+PG HG H
Sbjct: 333 GPPGVPGDHGDH 344



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 464 GIPGLPGEKGD 496
           G PG+PG+ GD
Sbjct: 333 GPPGVPGDHGD 343


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 195 PGLPGAPGQKGD 230
           PG PG PG  GD
Sbjct: 332 PGPPGVPGDHGD 343



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 266 PGIPGLPGEKGQKGDQGNE 322
           PG PG+PG+ G    +  E
Sbjct: 332 PGPPGVPGDHGDHAPKQTE 350



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 153 GEKGLPGTHGKH 188
           G  G+PG HG H
Sbjct: 333 GPPGVPGDHGDH 344



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 464 GIPGLPGEKGD 496
           G PG+PG+ GD
Sbjct: 333 GPPGVPGDHGD 343


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 195 PGLPGAPGQKGD 230
           PG PG PG  GD
Sbjct: 271 PGPPGVPGDHGD 282



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 266 PGIPGLPGEKG 298
           PG PG+PG+ G
Sbjct: 271 PGPPGVPGDHG 281



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 153 GEKGLPGTHGKH 188
           G  G+PG HG H
Sbjct: 272 GPPGVPGDHGDH 283



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 464 GIPGLPGEKGD 496
           G PG+PG+ GD
Sbjct: 272 GPPGVPGDHGD 282


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 124 GPIGPVSPFSPIRPVKP 74
           G + PVSP+  ++P+ P
Sbjct: 317 GILTPVSPYGYVKPISP 333


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 156 EKGLPGTHGKHGRPGL 203
           + GL G HG HG  GL
Sbjct: 131 QTGLHGLHGLHGLHGL 146


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 171 GTHGKHGRPGLPG 209
           G H  HG PG+ G
Sbjct: 330 GVHNLHGMPGILG 342


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 79  LLGEWEKKVTL 111
           LLGEWEK+  +
Sbjct: 174 LLGEWEKRAPM 184


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 79  LLGEWEKKVTL 111
           LLGEWEK+  +
Sbjct: 174 LLGEWEKRAPM 184


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 79  LLGEWEKKVTL 111
           LLGEWEK+  +
Sbjct: 174 LLGEWEKRAPM 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,946
Number of Sequences: 438
Number of extensions: 3793
Number of successful extensions: 48
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)