Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30565
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0085 - 25697860-25698142,25698631-25698946,25700481-257005...    29   3.9  
06_02_0323 + 14381803-14382091,14382116-14382348,14382364-143824...    29   5.1  

>02_05_0085 -
           25697860-25698142,25698631-25698946,25700481-25700518,
           25700955-25701036,25701815-25702016
          Length = 306

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 465 NSEYLMFDCVLQSH*PVLHRPHILKYIWQYFVPQQASLVLVDQW 334
           N   + ++C  +   P++  P + K  WQ  V +    VLV+ W
Sbjct: 89  NKPSIAWNCSFKEQTPIMKVPDVTKSTWQSLVVESELPVLVEFW 132


>06_02_0323 +
           14381803-14382091,14382116-14382348,14382364-14382460,
           14382900-14383024
          Length = 247

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/70 (21%), Positives = 33/70 (47%)
 Frame = +3

Query: 372 QNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYSFVCTLVQEVKVEDRL* 551
           +++  +++RC  C+   +    H   + +P   + W +  I   FV  L +  +  D + 
Sbjct: 3   KDVEMFVTRCTTCQKAKSRFNPHGLYMPLPVPSISWAD--ISVDFVLGLPRTKRGRDSIF 60

Query: 552 QVLDRA*KIS 581
            V+DR  K++
Sbjct: 61  VVVDRFSKMA 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,664,203
Number of Sequences: 37544
Number of extensions: 404065
Number of successful extensions: 895
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)