Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30565
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 139 2e-33
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 4e-21
SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32) 98 6e-21
SB_39426| Best HMM Match : C4 (HMM E-Value=0) 88 8e-18
SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.080
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 33 0.18
SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 33 0.24
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 32 0.56
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 32 0.56
SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 31 0.74
SB_31101| Best HMM Match : Collagen (HMM E-Value=0.14) 31 0.98
SB_52092| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.98
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 31 1.3
SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 30 1.7
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11) 30 1.7
SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_11354| Best HMM Match : Collagen (HMM E-Value=0.09) 29 3.0
SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 29 3.0
SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09) 29 3.0
SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06) 29 4.0
SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 29 4.0
SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05) 29 4.0
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29) 29 5.2
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073) 29 5.2
SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12) 28 6.9
SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0) 28 9.1
SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25) 28 9.1
SB_30076| Best HMM Match : Collagen (HMM E-Value=8.9e-07) 28 9.1
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2) 28 9.1
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12) 28 9.1
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 139 bits (337), Expect = 2e-33
Identities = 56/88 (63%), Positives = 73/88 (82%)
Frame = +3
Query: 246 EKVSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPAN 425
++ STMPFLFC++N+VCN ASRND S+WLST +PIPMMPV+ N+ YI RC VCEV ++
Sbjct: 1624 QRFSTMPFLFCNINNVCNLASRNDYSFWLSTPEPIPMMPVQETNVQPYIGRCAVCEVSSH 1683
Query: 426 VIAVHSQTLDIPSCPVGWNELWIGYSFV 509
V+AVHSQ++ +PSCP GW+ LW GYSF+
Sbjct: 1684 VMAVHSQSITVPSCPSGWSPLWQGYSFL 1711
Score = 97.9 bits (233), Expect = 8e-21
Identities = 46/98 (46%), Positives = 60/98 (61%)
Frame = +2
Query: 446 NIRYSELPSWLE*IMDWLQFCMHTXXXXXXXXXXLASPGSCLEDFRSIPFIECNGEGGTC 625
+I PS + F MHT L+SPGSCLEDFR+ PFIEC+G G TC
Sbjct: 1734 SITVPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSSPGSCLEDFRAHPFIECHGRG-TC 1792
Query: 626 HHFANKLSFWLTTVEDSQQFNVPERQTLKSGQLLERVS 739
H++ + SFWL TV+ ++QF +P +TLK+G L ERVS
Sbjct: 1793 HYYGSTYSFWLATVDQNKQFRIPRPETLKAGNLRERVS 1830
Score = 89.4 bits (212), Expect = 3e-18
Identities = 46/87 (52%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGA---PGAPCVSQDFLTGILLVRHSQREVVPQCEPSHVKLWD 171
G+EG GE G TG GL G+ PG P S DF G L RHSQ VP+C LW+
Sbjct: 1542 GIEGPLGEKGATGLPGLTGSIGVPGPPGYS-DF--GFFLTRHSQTVRVPRCPEDRPPLWE 1598
Query: 172 GYSLLYIDGNEKAHNQDLGYAGSCVRK 252
GYSLLY+ GNE+AH QDLG GSC+++
Sbjct: 1599 GYSLLYVQGNERAHGQDLGSPGSCIQR 1625
Score = 68.9 bits (161), Expect = 4e-12
Identities = 26/41 (63%), Positives = 34/41 (82%)
Frame = +3
Query: 387 YISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYSFV 509
YI RC VCEV ++V+AVHSQ++ +PSCP GW+ LW GYSF+
Sbjct: 1714 YIGRCAVCEVSSHVMAVHSQSITVPSCPSGWSPLWQGYSFL 1754
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +2
Query: 548 LASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNVPE 697
L SPGSC++ F ++PF+ CN N SFWL+T E V E
Sbjct: 1616 LGSPGSCIQRFSTMPFLFCNINNVCNLASRNDYSFWLSTPEPIPMMPVQE 1665
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G++GERG G+ GQ+GLPG PG
Sbjct: 977 GLKGERGRDGLDGQNGLPGIPG 998
Score = 34.7 bits (76), Expect = 0.080
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Frame = +1
Query: 115 HSQREVVPQCEPSHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCV-----RKLVQCH 267
HSQ VP C LW GYS L++ Q L GSC+ ++CH
Sbjct: 1731 HSQSITVPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSSPGSCLEDFRAHPFIECH 1787
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G GE GE G+ G SG PG PG P
Sbjct: 1040 GPRGETGEKGLDGPSGPPGTPGQP 1063
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G GE+G+ G+ GQ GL G PG P
Sbjct: 1133 GSLGEKGDAGIPGQRGLTGNPGLP 1156
Score = 31.5 bits (68), Expect = 0.74
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G G G G+ GQ GLPG PG
Sbjct: 706 GKPGPAGRAGLAGQDGLPGTPG 727
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G +G +G+ G G+ GLPG PGA
Sbjct: 906 GRDGMKGDPGPRGRDGLPGEPGA 928
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 438 HSQTLDIPSCPVGWNELWIGYSFV 509
HSQT+ +P CP LW GYS +
Sbjct: 1580 HSQTVRVPRCPEDRPPLWEGYSLL 1603
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G G+ G G++GLPG PG
Sbjct: 1316 GLPGRAGQAGPKGETGLPGMPG 1337
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ GERG +G G GLPG G
Sbjct: 1301 GIPGERGPVGPAGPPGLPGRAG 1322
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G EG RG G GQ+G G PG P
Sbjct: 1500 GYEGARGPPGAKGQAGEDGRPGVP 1523
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G G RG IG G +G PG PG
Sbjct: 611 GKRGPRGPIGEKGPTGFPGPPG 632
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G GE+GE G G+ G G PG P
Sbjct: 363 GAPGEKGEPGKQGEKGEEGRPGLP 386
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
GM+G+RG G G+ G G PG P
Sbjct: 608 GMDGKRGPRGPIGEKGPTGFPGPP 631
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G +G +GE G GQ+G PG G P
Sbjct: 1157 GAQGLKGEPGRDGQNGSPGRKGEP 1180
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G +GE G+ G G+ G PG PGA
Sbjct: 366 GEKGEPGKQGEKGEEGRPGLPGA 388
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G+ GE+G G TG SG PG G P
Sbjct: 852 GVTGEQGVKGDTGPSGEPGPAGPP 875
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 115 HSQREVVPQCEPSHVKLWDGYSLL 186
HSQ VP C LW GYS L
Sbjct: 1688 HSQSITVPSCPSGWSPLWQGYSFL 1711
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +G+ G G G+ G+PGAPG
Sbjct: 555 GFKGDPGPPGPPGEVGVPGAPG 576
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G GE+G G +G G PG PG P
Sbjct: 1043 GETGEKGLDGPSGPPGTPGQPGPP 1066
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
GM G GE G G G+PG PG
Sbjct: 1334 GMPGLDGEKGSAGVPGIPGGPG 1355
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAPCVS 81
G++G +GE G+ G+ G G G+P +S
Sbjct: 1391 GLDGPKGEPGLPGRDGPAGEKGSPGLS 1417
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G+ G+ G G+ G GLPG G P
Sbjct: 285 GVRGDTGFPGLNGTQGLPGPKGPP 308
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G G++GE G G+ GLPGA G
Sbjct: 369 GEPGKQGEKGEEGRPGLPGAQG 390
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +GE G +G G+ GL G PG
Sbjct: 885 GAKGEPGPLGTPGRQGLAGPPG 906
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 1 GMEGERGEI--GMTGQSGLPGAPGAP 72
GM+G +G+ G TG G PG PG P
Sbjct: 951 GMKGAKGDAITGPTGPPGPPGLPGRP 976
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G+ G RGE G +G G+ G PG P
Sbjct: 1473 GIPGPRGEKGDSGFPGINGPPGPP 1496
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G GE+G+ G G +G PG PG
Sbjct: 1476 GPRGEKGDSGFPGINGPPGPPG 1497
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G RG G G GLPG G P
Sbjct: 1109 GPAGPRGPAGRNGIDGLPGTKGEP 1132
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +G+RG G+ G SG+PG G
Sbjct: 1286 GAKGDRGIPGLNGLSGIPGERG 1307
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 98.7 bits (235), Expect = 4e-21
Identities = 41/86 (47%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAPCVSQDFLT--GILLVRHSQREVVPQCEPSHVKLWDG 174
G+ G +G+ G+ G G+PG PG P D +T G +V+HSQ P+C P++ KLWDG
Sbjct: 1426 GLSGNKGKEGLPGDDGVPGQPGPPGPPGDGITKVGFYIVKHSQTTTPPECPPTYDKLWDG 1485
Query: 175 YSLLYIDGNEKAHNQDLGYAGSCVRK 252
YSLLY+ G++ +H QDLG AGSC+++
Sbjct: 1486 YSLLYVQGHDVSHGQDLGQAGSCLKR 1511
Score = 89.4 bits (212), Expect = 3e-18
Identities = 36/67 (53%), Positives = 49/67 (73%)
Frame = +3
Query: 246 EKVSTMPFLFCDLNDVCNYASRNDRSYWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPAN 425
++ +TMP+L+C++ CNYASRND SYWLST +PMMP++ + YISRC VCE
Sbjct: 1510 KRFTTMPYLYCNIFGKCNYASRNDYSYWLSTDNQVPMMPIQASAVEPYISRCTVCESHGP 1569
Query: 426 VIAVHSQ 446
V+AVHS+
Sbjct: 1570 VMAVHSK 1576
Score = 78.2 bits (184), Expect = 7e-15
Identities = 39/76 (51%), Positives = 46/76 (60%)
Frame = +2
Query: 512 HTXXXXXXXXXXLASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQFNV 691
HT L S GSCLE FR PF EC+G GTCH++ANK SFWL TV + F
Sbjct: 1582 HTGAGGSGTGQSLGSSGSCLESFRPNPFTECHGR-GTCHYYANKYSFWLATV--NTPFQT 1638
Query: 692 PERQTLKSGQLLERVS 739
+ +TLK+G LL RVS
Sbjct: 1639 QQSETLKAGNLLSRVS 1654
Score = 35.9 bits (79), Expect = 0.034
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 548 LASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTT 664
L GSCL+ F ++P++ CN G + N S+WL+T
Sbjct: 1502 LGQAGSCLKRFTTMPYLYCNIFGKCNYASRNDYSYWLST 1540
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 429 IAVHSQTLDIPSCPVGWNELWIGYSFV 509
I HSQT P CP +++LW GYS +
Sbjct: 1463 IVKHSQTTTPPECPPTYDKLWDGYSLL 1489
Score = 32.7 bits (71), Expect = 0.32
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G GE G IG G+ G PG PG P
Sbjct: 980 GQAGETGAIGFKGEPGTPGIPGFP 1003
Score = 31.9 bits (69), Expect = 0.56
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAPCVSQD 87
G G++GE G G+ G+PGA G P + ++
Sbjct: 265 GAPGKKGEDGTKGEQGVPGAKGQPGLDRE 293
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G +G+ GE G G G PG PG P
Sbjct: 977 GFDGQAGETGAIGFKGEPGTPGIP 1000
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G GE G G G PGAPG
Sbjct: 92 GLPGPLGEAGPPGSQGSPGAPG 113
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +GE G+ GM G GL G PG
Sbjct: 956 GAKGESGQPGMRGADGLSGPPG 977
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +3
Query: 264 PFLFCDLNDVCNYASRNDRSYWLST-GQPIPMMPVE---GQNIAKYISRCVVC 410
PF C C+Y + N S+WL+T P E N+ +SRC VC
Sbjct: 1608 PFTECHGRGTCHYYA-NKYSFWLATVNTPFQTQQSETLKAGNLLSRVSRCQVC 1659
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ GERG G+ G G GAPG
Sbjct: 42 GLPGERGTGGVPGPKGKQGAPG 63
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +G+RGE G G+ G PGA G
Sbjct: 226 GPKGKRGETGPRGRPGEPGADG 247
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G G++G G G GAPGAP
Sbjct: 300 GESGAAGDLGPDGPPGPKGAPGAP 323
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G EG RG G GQSG G PG
Sbjct: 424 GKEGPRGPDGRDGQSGPKGLPG 445
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G G +G+ G TG G PG PGA
Sbjct: 223 GPPGPKGKRGETGPRGRPGEPGA 245
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G G++GE G G+ G PG GA
Sbjct: 867 GPRGKKGEAGSDGRPGFPGESGA 889
>SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)
Length = 176
Score = 98.3 bits (234), Expect = 6e-21
Identities = 41/86 (47%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAPCVSQDFLT--GILLVRHSQREVVPQCEPSHVKLWDG 174
G+ G +G+ G+ G G+PG PG P D +T G +V+HSQ P+C P++ KLWDG
Sbjct: 30 GLPGNKGKEGLPGDDGVPGQPGPPGPPGDGITKVGFYIVKHSQTTTPPECPPTYDKLWDG 89
Query: 175 YSLLYIDGNEKAHNQDLGYAGSCVRK 252
YSLLY+ G++ +H QDLG AGSC+++
Sbjct: 90 YSLLYVQGHDVSHGQDLGQAGSCLKR 115
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +3
Query: 246 EKVSTMPFLFCDLNDVCNYASRNDRSY 326
++ +TMP+L+C++ CNYASRND S+
Sbjct: 114 KRFTTMPYLYCNIFGKCNYASRNDYSH 140
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 429 IAVHSQTLDIPSCPVGWNELWIGYSFV 509
I HSQT P CP +++LW GYS +
Sbjct: 67 IVKHSQTTTPPECPPTYDKLWDGYSLL 93
>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
Length = 188
Score = 87.8 bits (208), Expect = 8e-18
Identities = 34/62 (54%), Positives = 44/62 (70%)
Frame = +3
Query: 324 YWLSTGQPIPMMPVEGQNIAKYISRCVVCEVPANVIAVHSQTLDIPSCPVGWNELWIGYS 503
YWLST +PMMP++ + YISRC VCE V+AVHSQ+ +P+CP GW+ LW GYS
Sbjct: 2 YWLSTDNQVPMMPIQASAVEPYISRCTVCESHGPVMAVHSQSTTLPTCPGGWSSLWSGYS 61
Query: 504 FV 509
F+
Sbjct: 62 FL 63
Score = 84.2 bits (199), Expect = 1e-16
Identities = 42/79 (53%), Positives = 49/79 (62%)
Frame = +2
Query: 503 FCMHTXXXXXXXXXXLASPGSCLEDFRSIPFIECNGEGGTCHHFANKLSFWLTTVEDSQQ 682
F MHT L S GSCLE FR PFIEC+G GTCH++ANK SFWL TV +
Sbjct: 62 FLMHTGAGGSGTGQSLGSSGSCLESFRPNPFIECHGR-GTCHYYANKYSFWLATV--NTP 118
Query: 683 FNVPERQTLKSGQLLERVS 739
F + +TLK+G LL RVS
Sbjct: 119 FQTQQSETLKAGNLLSRVS 137
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Frame = +1
Query: 97 GILLVRHSQREVVPQCEPSHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVRK-----LV 258
G ++ HSQ +P C LW GYS L++ Q LG +GSC+ +
Sbjct: 34 GPVMAVHSQSTTLPTCPGGWSSLWSGYSFLMHTGAGGSGTGQSLGSSGSCLESFRPNPFI 93
Query: 259 QCH 267
+CH
Sbjct: 94 ECH 96
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +3
Query: 264 PFLFCDLNDVCNYASRNDRSYWLST-GQPIPMMPVE---GQNIAKYISRCVVC 410
PF+ C C+Y + N S+WL+T P E N+ +SRC VC
Sbjct: 91 PFIECHGRGTCHYYA-NKYSFWLATVNTPFQTQQSETLKAGNLLSRVSRCQVC 142
>SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G+RG IG TG +GLPG+ GAP
Sbjct: 246 GKAGDRGAIGKTGNAGLPGSTGAP 269
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G +G G+ GM G G G PG P
Sbjct: 136 GTDGPPGDAGMQGSDGANGQPGLP 159
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G +G G GQ GLPG G P
Sbjct: 142 GDAGMQGSDGANGQPGLPGRDGVP 165
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G+RG G TG+ G G PG
Sbjct: 285 GITGDRGAQGKTGKQGPTGTPG 306
>SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 34.7 bits (76), Expect = 0.080
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
GM+G++G+ G G +GL GAPG+P
Sbjct: 171 GMKGDKGDPGKQGLTGLTGAPGSP 194
Score = 32.7 bits (71), Expect = 0.32
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP--CVSQ 84
G +G+ G+ G+TG +G PG+PG P C+++
Sbjct: 174 GDKGDPGKQGLTGLTGAPGSPGLPGNCINK 203
Score = 31.5 bits (68), Expect = 0.74
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G EG+RG+ G+ G G G PG P
Sbjct: 129 GKEGKRGKTGLPGTDGRDGRPGVP 152
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G +G+ G+TG G PG PG
Sbjct: 231 GITGPKGDAGITGPKGTPGDPG 252
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G +G G+ G TG G PG PG P
Sbjct: 243 GPKGTPGDPGPTGSRGRPGKPGLP 266
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +G RG+ G G++GLPG G
Sbjct: 123 GAKGSRGKEGKRGKTGLPGTDG 144
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G G IG G+ GLPG PG
Sbjct: 150 GVPGPIGPIGPPGKIGLPGIPG 171
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G+ G +GE+G G++G PG PG P
Sbjct: 817 GVSGPKGEMGPEGEAGQPGPPGPP 840
Score = 31.5 bits (68), Expect = 0.74
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G G+RG+ G TG+ GLPGA G
Sbjct: 580 GGRGKRGQRGETGEQGLPGARG 601
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G++GE GE G G SG PG+ G
Sbjct: 132 GLDGENGEQGQKGSSGDPGSEG 153
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G G G +G TGQ G PG GA
Sbjct: 838 GPPGPNGPVGQTGQPGTPGPDGA 860
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G G +G G G G PGAPGA
Sbjct: 374 GEAGRQGPPGANGDRGQPGAPGA 396
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G EG RG+ G G++G G PGA
Sbjct: 577 GHEGGRGKRGQRGETGEQGLPGA 599
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G G RG G+ G SGL G PG
Sbjct: 604 GANGPRGPRGIKGASGLQGGPG 625
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAPCVSQD-FLTGILLVRHSQREVVPQCEPSHVKLWD 171
G G G+ G GQ+G+PG G + F G R QR++ C +D
Sbjct: 413 GRVGPDGKTGPKGQNGIPGRDGRKGERVEVFTLGTFKQRQRQRQLQRGCRRQKTMKFD 470
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +GE G G GQ G PG PG
Sbjct: 820 GPKGEMGPEGEAGQPGPPGPPG 841
>SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
GM G G G G+ G PGAPGAP
Sbjct: 100 GMAGPPGPPGHVGEDGAPGAPGAP 123
Score = 31.9 bits (69), Expect = 0.56
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G+ GE+G+ G+ G G G PGAP
Sbjct: 133 GLPGEKGDPGLQGAPGAAGLPGAP 156
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G G +G G G PGAPG P
Sbjct: 103 GPPGPPGHVGEDGAPGAPGAPGPP 126
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G GE G G G G PG+PGAP
Sbjct: 109 GHVGEDGAPGAPGAPGPPGSPGAP 132
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPG------APGAP 72
G GE G++GM G G PG APGAP
Sbjct: 91 GPPGEPGQVGMAGPPGPPGHVGEDGAPGAP 120
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G GE G G G PG PG+P
Sbjct: 106 GPPGHVGEDGAPGAPGAPGPPGSP 129
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G +G G G G G PGAPG P
Sbjct: 112 GEDGAPGAPGAPGPPGSPGAPGLP 135
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 33.1 bits (72), Expect = 0.24
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G +G RG +G G +G+PG+PGA
Sbjct: 223 GPQGSRGPVGPRGANGVPGSPGA 245
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G +G++GE G G+ G GAPG P
Sbjct: 442 GEQGKQGEKGHAGEGGADGAPGIP 465
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G RG+ G G+ G PG GAP
Sbjct: 409 GAPGARGDYGERGEPGAPGRDGAP 432
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G GERGE G G+ G PGA G
Sbjct: 415 GDYGERGEPGAPGRDGAPGAQG 436
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +GE+G G G G PG PG
Sbjct: 445 GKQGEKGHAGEGGADGAPGIPG 466
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G+RG G G GL G PG P
Sbjct: 124 GKRGDRGTPGAKGPPGLAGEPGEP 147
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPG 57
G++G+RG G+ G+ G+PG
Sbjct: 259 GLKGDRGADGLPGEDGIPG 277
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G+ G+RG+ G G G PG G P
Sbjct: 121 GLPGKRGDRGTPGAKGPPGLAGEP 144
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G GEIG G +GLPG PG
Sbjct: 608 GVNGPPGEIGEIGPAGLPGPPG 629
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G G+IG G GLPG PG
Sbjct: 693 GINGPPGQIGEMGPPGLPGPPG 714
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G G++G G GLPG PG
Sbjct: 778 GINGPPGQVGEMGPPGLPGPPG 799
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G G++G G GLPG PG
Sbjct: 863 GINGPPGQVGEMGPPGLPGPPG 884
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G GE+G G G PG PG P
Sbjct: 137 GPPGTNGELGPPGDVGPPGNPGGP 160
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G +G G G GLPG PG P
Sbjct: 52 GFPGPQGPNGPKGPPGLPGPPGPP 75
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G G +G G GLPG PG
Sbjct: 353 GINGPPGPLGDVGPPGLPGPPG 374
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G G +G G GLPG PG
Sbjct: 438 GINGPPGPLGDVGPPGLPGPPG 459
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G G +G G GLPG PG
Sbjct: 523 GINGPPGPLGDVGPPGLPGPPG 544
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPG---APGAP 72
G+ GE G GM G+ G PG APGAP
Sbjct: 117 GLPGESGSAGMVGRPGRPGFDGAPGAP 143
Score = 31.5 bits (68), Expect = 0.74
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G+RGE+G+ G+SG G G P
Sbjct: 108 GPRGQRGEVGLPGESGSAGMVGRP 131
Score = 31.5 bits (68), Expect = 0.74
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G EG G GM G SG PG PG P
Sbjct: 645 GGEGTPGSQGMPGMSGPPGRPGPP 668
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G GERG +G G G PG G P
Sbjct: 429 GEPGERGPVGPQGPQGAPGTQGPP 452
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G GERG +G G G GAPG+
Sbjct: 543 GSRGERGRVGPPGIDGKDGAPGS 565
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAPCVS 81
G G+RG +G G G PG+ G P +S
Sbjct: 633 GTLGQRGRLGSKGGEGTPGSQGMPGMS 659
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G +G GM+G G PG PG P
Sbjct: 648 GTPGSQGMPGMSGPPGRPGPPGPP 671
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G++G RG G G GLPG PG
Sbjct: 168 GLQGVRGAPGNEGARGLPGNPG 189
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G +G RGE G G G+ G GAP
Sbjct: 540 GAKGSRGERGRVGPPGIDGKDGAP 563
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G RG +G G G PG PG P
Sbjct: 888 GPPGPRGNVGPMGPMGDPGLPGPP 911
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G G +G G GLPG PG P
Sbjct: 891 GPRGNVGPMGPMGDPGLPGPPGPP 914
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
GM G G G G G PG+PGA
Sbjct: 126 GMVGRPGRPGFDGAPGAPGSPGA 148
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G G++G+TGQ+G G G P
Sbjct: 144 GSPGAEGKVGLTGQTGPRGPTGPP 167
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G GERG G TG +GL G G P
Sbjct: 474 GAMGERGPQGETGPTGLTGPTGKP 497
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAPCVSQD 87
G +G G G GQ+G+ G PG P + D
Sbjct: 207 GPQGPSGPQGSKGQAGIDGRPGEPGLPGD 235
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G+RG G G G PG PG
Sbjct: 267 GINGDRGPNGSPGPRGAPGPPG 288
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G GE G +G+ G +G PG G P
Sbjct: 735 GRAGEPGAVGLRGPTGQPGENGLP 758
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G++GERG G G++G G PG
Sbjct: 801 GLKGERGSPGEPGKAGKQGPPG 822
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G +GE G G+TG +G PG G+
Sbjct: 480 GPQGETGPTGLTGPTGKPGDRGS 502
>SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 31.5 bits (68), Expect = 0.74
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G++G G G G SG PG PGAP
Sbjct: 250 GLQGPPGLNGQAGTSGAPGFPGAP 273
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
GM G +G G +G G+PG+PG P
Sbjct: 289 GMPGPQGYPGGSGAPGIPGSPGMP 312
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G++G G GM G G PG GAP
Sbjct: 280 GLDGMPGAPGMPGPQGYPGGSGAP 303
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 4 MEGERGEIGMTGQSGLPGAPGAP 72
++G +G G+ GQ+G GAPG P
Sbjct: 248 LKGLQGPPGLNGQAGTSGAPGFP 270
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G G G+ G +G G PGAPG
Sbjct: 253 GPPGLNGQAGTSGAPGFPGAPG 274
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G G G G G+PGAPG P
Sbjct: 268 GFPGAPGFQGPPGLDGMPGAPGMP 291
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 31.5 bits (68), Expect = 0.74
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G G+RGE G GQSG PGA G
Sbjct: 676 GDRGKRGERGPNGQSGKPGAKG 697
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
GMEG +G G G+ G PG GAP
Sbjct: 83 GMEGRQGVQGKDGEEGPPGPNGAP 106
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G+ GERG+ G+ G G PG G+P
Sbjct: 242 GIPGERGDRGILGVQGEPGKDGSP 265
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 10 GERGEIGMTGQSGLPGAPGAP 72
G G +G G GLPG PG+P
Sbjct: 1129 GPTGPVGEQGSYGLPGKPGSP 1149
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G++G+ GE G G +G PG PG
Sbjct: 89 GVQGKDGEEGPPGPNGAPGRPG 110
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G EG G GMTG G PG G P
Sbjct: 185 GSEGPYGPQGMTGDRGKPGLVGDP 208
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G GE+G G+ G+ G PG G P
Sbjct: 1132 GPVGEQGSYGLPGKPGSPGTKGLP 1155
>SB_31101| Best HMM Match : Collagen (HMM E-Value=0.14)
Length = 417
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G++G +GE G+ G SG PGA G
Sbjct: 254 GLQGPKGERGLPGASGAPGARG 275
>SB_52092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 31.1 bits (67), Expect = 0.98
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G +G +G +G+ G +G+PG PGA
Sbjct: 443 GTQGIQGPMGVNGSAGVPGPPGA 465
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G EGE G +G TG GLPG G
Sbjct: 233 GPEGEPGPVGPTGVPGLPGVKG 254
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G +G+ G G GQSG PG PG P
Sbjct: 962 GPQGDPGPEGERGQSGPPGPPGPP 985
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G GERGE G G +G GA G P
Sbjct: 200 GEPGERGEPGEPGAAGAKGAKGQP 223
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G GE+GE G TG+ G G G P
Sbjct: 260 GARGEKGEQGKTGERGPVGEAGRP 283
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G GE G +G G PG PG P
Sbjct: 965 GDPGPEGERGQSGPPGPPGPPGPP 988
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G GE GE G G G G PG P
Sbjct: 203 GERGEPGEPGAAGAKGAKGQPGPP 226
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G +G+ GE G G++G PG G P
Sbjct: 266 GEQGKTGERGPVGEAGRPGQNGLP 289
>SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAPCVS 81
GM G G G G G PGAPG P V+
Sbjct: 149 GMPGRDGTNGKEGSPGPPGAPGPPGVN 175
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +G+RG G++G++G PGA G
Sbjct: 203 GPKGDRGPTGLSGENGEPGARG 224
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G G G G+ G PG PGAP
Sbjct: 146 GPMGMPGRDGTNGKEGSPGPPGAP 169
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G++GERG IG G G G G P
Sbjct: 179 GLQGERGPIGPKGLMGDKGVQGLP 202
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G +G G G+ G G+PG PGAP
Sbjct: 1689 GPKGPPGPPGLPGPQGIPGYPGAP 1712
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G++G G G G G+PG PG P
Sbjct: 1780 GVDGPPGLAGPQGPKGMPGPPGPP 1803
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G+ G +G GM G G PG PGA
Sbjct: 1786 GLAGPQGPKGMPGPPGPPGPPGA 1808
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G++G G G G G PG PG P
Sbjct: 1823 GLDGPPGPPGPQGPKGWPGVPGPP 1846
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G G +GEIG+ G GL G+PG
Sbjct: 3456 GFPGLKGEIGLIGPPGLAGSPG 3477
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G++GE G IG G +G PG GAP
Sbjct: 3459 GLKGEIGLIGPPGLAGSPGQTGAP 3482
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 7 EGERGEIGMTGQSGLPGAPGAP 72
+GE G G+ G+SG PG G+P
Sbjct: 3592 KGETGTTGVKGESGTPGLDGSP 3613
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
GM G +GE G G G PG PG
Sbjct: 3734 GMAGSQGEKGGKGDPGFPGLPG 3755
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G +GERG G G+ G GAPG+
Sbjct: 3698 GGKGERGAQGPRGEKGNTGAPGS 3720
>SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +1
Query: 1 GMEGERGE---IGMTGQSGLPGAPGA 69
G EGERG+ IGMTG GL G GA
Sbjct: 13 GPEGERGQQGPIGMTGPPGLAGGVGA 38
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G G +GE G GQ G PG PG+
Sbjct: 243 GKSGSKGESGDKGQPGKPGKPGS 265
>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
Length = 476
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G++GE+G G G G PG PGA
Sbjct: 392 GLQGEKGPQGDQGPKGEPGTPGA 414
>SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G RG +G G G PG PG P
Sbjct: 191 GKTGPRGPMGPIGPPGTPGVPGQP 214
>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G +G RG G G++G+PG PG+
Sbjct: 274 GKQGLRGATGRPGRNGVPGRPGS 296
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G +G G TG+ GL G PG
Sbjct: 376 GLRGPQGPRGFTGKQGLRGVPG 397
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G RG+ G+ G +G PG G P
Sbjct: 268 GARGARGKQGLRGATGRPGRNGVP 291
>SB_11354| Best HMM Match : Collagen (HMM E-Value=0.09)
Length = 116
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G++G +GE G G SG PGA G
Sbjct: 41 GLQGPKGERGPPGASGAPGARG 62
>SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 369 GQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWNELWIGY 500
G+++ + C VC VP+ S L IPS CP GW+ + GY
Sbjct: 102 GKSLHDHDVPCAVCYVPSR-----STQLMIPSVARCPTGWSREYYGY 143
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ G GE G G G PGAPG
Sbjct: 92 GLPGPLGEAGPPGSQGSPGAPG 113
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G+ GERG G+ G G GAPG
Sbjct: 42 GLPGERGTGGVPGPKGKQGAPG 63
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +G+RGE G G+ G PGA G
Sbjct: 226 GPKGKRGETGPRGRPGEPGADG 247
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G G +G+ G TG G PG PGA
Sbjct: 223 GPPGPKGKRGETGPRGRPGEPGA 245
>SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)
Length = 536
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G++G +GE G G SG PGA G
Sbjct: 189 GLQGPKGERGPPGASGAPGARG 210
>SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +G +GE G G+SGLPG G
Sbjct: 32 GRDGVKGERGSKGKSGLPGDKG 53
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G++G+ G G+ G GLPG PG
Sbjct: 86 GLKGDAGYDGVDGFKGLPGPPG 107
>SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06)
Length = 88
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +G+RG IG G G GAPG
Sbjct: 10 GPKGDRGPIGPRGPQGYQGAPG 31
>SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 369 GQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWNELWIGY 500
G+++ + C VC VP+ S L IP+ CP GW+ + GY
Sbjct: 79 GKSLQNHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 120
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G+EG+RG IG G SG G GA
Sbjct: 2 GLEGDRGPIGKPGVSGTKGNIGA 24
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G++G G G G PG PG P
Sbjct: 314 GERGKKGPFGSIGDMGPPGEPGKP 337
>SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)
Length = 346
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G+ G RG G G G+PG GAP
Sbjct: 92 GLPGYRGPKGPPGYQGMPGIAGAP 115
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +G G G++G G PGAPG
Sbjct: 54 GTKGPPGSQGLSGVQGYPGAPG 75
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +G RG G G+ G PG+PG
Sbjct: 141 GQKGTRGRRGQRGRRGNPGSPG 162
>SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29)
Length = 407
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G G++G GQ G PG G P
Sbjct: 372 GNVGPAGQVGNNGQDGTPGKDGVP 395
>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
Length = 863
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G +G+RG G G GLPGA G
Sbjct: 488 GPKGDRGPAGPPGPRGLPGAQG 509
>SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 369 GQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWNELWIGY 500
G+++ + C VC VP+ S L IP+ CP GW+ + GY
Sbjct: 115 GKSLHDHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 156
>SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = +1
Query: 4 MEGERGEIGMTGQSGL----PGAPGAP 72
MEG +GE+G G+ GL P PG P
Sbjct: 28 MEGNKGELGAKGEKGLQGNTPDQPGPP 54
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 369 GQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWNELWIGY 500
G ++ + C VC VP+ S L IP+ CP GW+ + GY
Sbjct: 55 GNSLQDHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 96
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 369 GQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWNELWIGY 500
G+++ + C VC VP+ S L IP+ CP GW+ + GY
Sbjct: 415 GKSLHDHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 456
>SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12)
Length = 299
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G++GERG G G GL G PG
Sbjct: 179 GIKGERGPKGDVGPRGLKGEPG 200
>SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G +G G G G SG PGA G+P
Sbjct: 50 GKDGPEGPQGPKGDSGSPGAVGSP 73
>SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 369 GQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWNELWIGY 500
G+ + ++ C VC VP+ S L IP+ CP GW+ + GY
Sbjct: 67 GKALHEHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 108
>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1283
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 529 SRWRTGFSKSWIV 567
+RWRTG SK+WIV
Sbjct: 1075 TRWRTGQSKAWIV 1087
>SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25)
Length = 311
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAP 72
G G +G+ G GQ G G PG P
Sbjct: 133 GPNGPKGDSGRPGQDGRQGPPGPP 156
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G +G+ G G G+ G PG PGA
Sbjct: 136 GPKGDSGRPGQDGRQGPPGPPGA 158
>SB_30076| Best HMM Match : Collagen (HMM E-Value=8.9e-07)
Length = 198
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAPCVSQDFLTG 99
G +G++GE G G GL G G + +TG
Sbjct: 125 GDKGDKGEKGDKGDQGLKGNQGVSATATPIITG 157
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGAPCVSQD 87
G GE GE G +G+SG G G SQD
Sbjct: 704 GESGESGESGESGESGESGESGDSGESQD 732
>SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)
Length = 288
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 369 GQNIAKYISRCVVCEVPANVIAVHSQTLDIPS---CPVGWNELWIGY 500
G+ + ++ C VC VP+ S L IP+ CP GW+ + GY
Sbjct: 141 GKALHEHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 182
>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
Length = 182
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPGA 69
G +G RG G G G PG PGA
Sbjct: 35 GEKGNRGRRGRRGPRGPPGKPGA 57
>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2201
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GMEGERGEIGMTGQSGLPGAPG 66
G G RG G GQ+GL G PG
Sbjct: 553 GFSGPRGLQGTPGQNGLQGPPG 574
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,242,610
Number of Sequences: 59808
Number of extensions: 494869
Number of successful extensions: 1809
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1761
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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