Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30565
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72760.1 68414.m08413 protein kinase family protein contains ...    31   1.1  
At1g47450.1 68414.m05260 expressed protein                             30   1.9  
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra...    29   3.2  
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra...    29   3.2  
At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein (...    29   4.3  

>At1g72760.1 68414.m08413 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 697

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 136 PQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRK 252
           PQC   HV+L D     + D  ++AH   L + G C RK
Sbjct: 43  PQCVLIHVQLGDTGGHFHQDNPDEAHEFFLPFRGFCARK 81


>At1g47450.1 68414.m05260 expressed protein
          Length = 169

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
 Frame = +1

Query: 106 LVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYA----GSCVRKL 255
           ++    RE++   +  H +L +G+S +Y+ GN  A ++D+ Y+      CVR++
Sbjct: 105 IINECCREILKMGKDCHFRLVEGWSAMYVYGNSIA-SKDIPYSKQSWNECVRRV 157


>At2g37410.2 68415.m04588 mitochondrial import inner membrane
           translocase (TIM17) nearly identical to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}
          Length = 243

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 1   GMEGERGEIGMTGQSGLPGAPGAP 72
           GM+G  G  GM G  G+PG  G P
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMP 172



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 1   GMEGERGEIGMTGQSGLPGAPG 66
           GM+G +G  GM G  G+PG  G
Sbjct: 155 GMQGMQGMPGMPGMQGMPGMQG 176


>At2g37410.1 68415.m04587 mitochondrial import inner membrane
           translocase (TIM17) nearly identical to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}
          Length = 243

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 1   GMEGERGEIGMTGQSGLPGAPGAP 72
           GM+G  G  GM G  G+PG  G P
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMP 172



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 1   GMEGERGEIGMTGQSGLPGAPG 66
           GM+G +G  GM G  G+PG  G
Sbjct: 155 GMQGMQGMPGMPGMQGMPGMQG 176


>At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein
           (ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1)
           from GI:4519792 [Arabidopsis thaliana]; contains
           InterPro accession IPR001164: Human Rev interacting-like
           protein (hRIP)
          Length = 456

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 289 SFKSQNRNGIVLTFSHKNQHILNLDYGLFRCHLCTIKN 176
           + +SQ  N + +  S KN    ++ YG+F C  C+ K+
Sbjct: 9   TLQSQPENKVCVDCSQKNPQWASISYGIFMCLECSGKH 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,275,175
Number of Sequences: 28952
Number of extensions: 340138
Number of successful extensions: 767
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)