Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30564
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    31   0.12 
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    28   1.5  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    27   2.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   3.4  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   4.5  
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    26   6.0  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   7.9  

>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 319 ISLDSSVPLATRASISATMADFWHQVVSNLPN 224
           I  ++S  +A + SIS +++DFWH V  N+ N
Sbjct: 330 IKTETSNYIACQGSISRSISDFWHMVWDNVEN 361


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 369 AALKILHNAESLELRAFTLQCLL---AMNRPDLARKQLKLLQDIEDDGTLR 512
           A +K+ H+ + L     T+  L    AM   DL +K  +LLQ I DDG ++
Sbjct: 267 AQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVK 317


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 512 QLAQAWLNLIQGG-PGIQDAHYSVMELS 592
           QLAQ+W+ ++ GG     DA Y   EL+
Sbjct: 163 QLAQSWIKIVSGGVESYNDAFYVFEELN 190


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 298 VRNCPMKYS*LWLQQFTIMKIIMKLH*KSFI 390
           +R CP      + QQ +I+ +I++ H +SF+
Sbjct: 857 MRTCPTNILEFYFQQLSILVLIVRQHIRSFL 887


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 326 QEYFIGQFRTFSYSSINISNNGRFLASGSK*STKL 222
           +EY +    +     I+ S+NGR+LAS SK  T +
Sbjct: 204 KEYHVFHDHSDEVWQISYSHNGRYLASASKDKTAI 238


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 39  KMHFMLEIISKLLMRHKALPFYTPGSTPTRCIPISFLHCPG 161
           K HF+L     L+  H  LP Y   +   R + IS  H PG
Sbjct: 53  KAHFVLTHFP-LIDGHNDLPIYLRENYDNRLLNISLEHLPG 92


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 324 LIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCL 434
           LI+    Y H   Y + ++ILHN E  +L  F  +CL
Sbjct: 214 LIMKQFSYSHHMGYISEIRILHN-EYEKLLKFVRECL 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,115
Number of Sequences: 5004
Number of extensions: 51162
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)