Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30564
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 64 1e-10
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 60 2e-09
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675... 36 0.024
03_06_0191 - 32228642-32228949,32229028-32230567 30 1.5
01_03_0196 - 13696056-13697448,13697676-13697713 30 1.5
03_03_0101 - 14431327-14432390,14432599-14432731 28 6.2
11_01_0505 - 3905715-3905748,3906922-3907358 28 8.3
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/67 (41%), Positives = 43/67 (64%)
Frame = +3
Query: 309 SNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQD 488
SN + ++A I+ HE +Y ALK H+ +L+L A +Q + M+R D A KQLK++Q
Sbjct: 100 SNPVLRLIAGIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQ 159
Query: 489 IEDDGTL 509
I++D TL
Sbjct: 160 IDEDHTL 166
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 115 ALQRDAFLYRSYIAQGNYRIVQQEL-KTADPMLQPLKSLVDY 237
A +RDA ++RSY+A G+Y++V E+ +A LQ +K L Y
Sbjct: 36 AAERDAIVFRSYVALGSYQLVISEIDSSAATSLQAVKLLALY 77
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 20 DELFDVKNAFYVGNYQQAINEA 85
D LF+++N FY+G YQ AIN +
Sbjct: 5 DLLFNLRNLFYLGAYQAAINNS 26
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 509 TQLAQAWLNLIQGGPGIQDAHYSVMELSE 595
TQLA AWL++ GG I++A+ + +E
Sbjct: 167 TQLANAWLDIAVGGSKIREAYLIFQDFAE 195
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/85 (35%), Positives = 50/85 (58%)
Frame = +3
Query: 255 KSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCL 434
K + + ++ +A SN I +VA T+ HE +Y ALK ++ ++EL A +Q
Sbjct: 92 KESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQIC 151
Query: 435 LAMNRPDLARKQLKLLQDIEDDGTL 509
L M+R D A KQL+++Q +++D TL
Sbjct: 152 LQMHRSDHAEKQLRIMQQLDEDHTL 176
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2
Query: 509 TQLAQAWLNLIQGGPGIQDAHYSVMELSE 595
TQLA AW++L+ GG IQ+AH +LSE
Sbjct: 177 TQLANAWVDLVMGGSKIQEAHLIFQDLSE 205
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 103 TPLVALQRDAFLYRSYIAQGNYRIVQQEL-KTADPMLQPLKSLVDY 237
+P +RD+ LYRSYIA G++++V E+ A LQ ++ L Y
Sbjct: 39 SPDALAERDSLLYRSYIAIGSHQLVIDEIGPGAATPLQAVRLLTVY 84
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 20 DELFDVKNAFYVGNYQQAINEAQSV 94
D LF ++N+FYVG YQ I Q++
Sbjct: 8 DHLFGLRNSFYVGAYQAVITGVQAI 32
>03_06_0222 +
32466379-32466741,32466849-32466948,32467443-32467547,
32467627-32467789,32467995-32468115,32468625-32468705,
32468813-32468911,32468955-32468986,32468987-32469137,
32469477-32469563,32470290-32470409,32470514-32470645,
32470743-32470840,32470919-32471042,32471126-32471233,
32471822-32471957,32472751-32472861,32472963-32473026,
32473133-32473205,32473762-32473938,32474012-32474122,
32474189-32474449,32474811-32474981,32475073-32475228,
32475590-32475823,32475936-32476103,32476316-32476425,
32476513-32477041
Length = 1394
Score = 36.3 bits (80), Expect = 0.024
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Frame = +3
Query: 333 AATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLR 512
A+++YY N E +L H+A LE A C +++P + RK L + +
Sbjct: 464 ASSVYYRVSNEEPSL---HSAVLLEQAA----CCYVLSKPPMLRKYGFHLVLAGNSYYIS 516
Query: 513 S*HKHG*I*FRAAL-VSKTHTTA*WSYLNASVHWDLVRPLSVLGL 644
+H +R AL V K H WSY+N VH+++ R VLG+
Sbjct: 517 DQKQHAVRAYRNALFVYKQHP---WSYINDHVHFNVGRWYGVLGI 558
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 288 VAKGTELSNEIFLIVAATIYYHEDNYEAALKILH----NAESLELRAFTLQCLLAMNRPD 455
V + TE+++ + + + + N++ AL +L N ES+ L+CL+ + D
Sbjct: 492 VVQDTEVASSVLTVFILALC-KQGNFKGALSVLSCIPSNVESVNSHVILLKCLIDVGEVD 550
Query: 456 LARKQLKLLQ 485
LA + +K ++
Sbjct: 551 LAIEHIKSIR 560
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +3
Query: 348 YHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLK 476
YH + ++++K LH+ + L + A + C+++ P L ++ K
Sbjct: 16 YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDK 58
>03_03_0101 - 14431327-14432390,14432599-14432731
Length = 398
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 316 SLDSSVPLATRASISATMADFWHQVVSNLP 227
SL SVP T A+ +AT W Q+ + LP
Sbjct: 101 SLSRSVPSLTMAAATATALARWSQIAAQLP 130
>11_01_0505 - 3905715-3905748,3906922-3907358
Length = 156
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 292 ATRASISATMADFWHQVVSNLPNSSMA 212
A +A + FWH VVS PNS++A
Sbjct: 22 AAQAQRETKLRVFWHDVVSGGPNSTVA 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,451,770
Number of Sequences: 37544
Number of extensions: 342076
Number of successful extensions: 804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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