Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30564
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24897| Best HMM Match : Coatomer_E (HMM E-Value=4.2e-11)            50   2e-06
SB_23022| Best HMM Match : CUB (HMM E-Value=0)                         30   2.1  
SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22)           28   6.4  

>SB_24897| Best HMM Match : Coatomer_E (HMM E-Value=4.2e-11)
          Length = 155

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = +2

Query: 14 DVDELFDVKNAFYVGNYQQAINEAQ 88
          DVDELFDVKNAF++GNYQ  INEAQ
Sbjct: 6  DVDELFDVKNAFFIGNYQGCINEAQ 30


>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
          Length = 1307

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = -3

Query: 316 SLDSSVPLATRASISATMADFWHQVVSNLPNSSMAVA*DLQSLVLVALSCSYP 158
           S+ +SVPL+  ASIS+     +  V +++P S++A    +Q+    ++  S P
Sbjct: 666 SIQASVPLSAVASISSVQGSDYPSVQASVPPSAVASVSSVQASDYPSIQASVP 718


>SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +3

Query: 351 HEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQ 470
           H D  EAAL +L    S E+R  TL+  L  N+ DL RK+
Sbjct: 211 HVDQEEAALPMLLQRHSAEMR--TLRERLKRNKQDLIRKE 248


>SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22)
          Length = 432

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +1

Query: 520 TSMAESNSGRPWYPRRTLQRDGVI*TPRFTGTWSGLSRCWGCSCQRYVGR 669
           TS A S S   + PR T  + G I  P F   W   S     S +RY+ R
Sbjct: 39  TSPALSTSLERYIPR-TFHQSGKIHHPHFPPVWQDTSSALSTSLERYIIR 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,311,491
Number of Sequences: 59808
Number of extensions: 406005
Number of successful extensions: 996
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)