Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30564
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical pr...    49   4e-06
Z49908-7|CAA90099.1|  294|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical ...    29   4.3  
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeas...    28   7.4  
U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeas...    28   7.4  
U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeas...    28   7.4  
AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical
           protein F45G2.4 protein.
          Length = 292

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 29/99 (29%), Positives = 49/99 (49%)
 Frame = +3

Query: 213 AIEEFGRLLTT*CQKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHN 392
           A+  +         K  I+A++   VA    + +EI  ++AATI    D  + A + +  
Sbjct: 70  AVRRYAEFRNNPAAKKKILAEVQEEVAS-RNIKSEIAAVLAATILNEADLSQDAFRAVSR 128

Query: 393 AESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTL 509
            E LE RA  +  L+ MN+  LA  ++K +  I++D TL
Sbjct: 129 FEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATL 167



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 121 QRDAFLYRSYIAQGNYRIVQQELKTA 198
           ++D +LYRSYIAQG   I  +E+  A
Sbjct: 37  EKDVYLYRSYIAQGQAFIPLKEIPAA 62


>Z49908-7|CAA90099.1|  294|Caenorhabditis elegans Hypothetical
           protein C07E3.8 protein.
          Length = 294

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 354 EDNYEAALKILHNAESLELRAFTLQCLLAMNR 449
           E  +E   +  H+ ESLE+ +FT+ CLL  NR
Sbjct: 117 EGVFETPFEKPHHFESLEITSFTIDCLLYGNR 148


>AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical
           protein T08E11.1 protein.
          Length = 649

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +3

Query: 216 IEEFGRLLTT*CQKSAIVA--DIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILH 389
           +E+F  +LTT C K A +   ++D    K  EL +  FL +        D+  A+L+   
Sbjct: 473 VEKF--ILTTICLKQAALTLQNVDPVTLKSIELRSNSFLNIVQPF----DDL-ASLEQCK 525

Query: 390 NAESLELRAFTLQC 431
           NA+ L++  F +QC
Sbjct: 526 NADELKMENFRVQC 539


>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 303 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 467
           E +NE+F ++A+ I Y  DN+ A++      ++L +     Q L  + +    +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 303 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 467
           E +NE+F ++A+ I Y  DN+ A++      ++L +     Q L  + +    +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172


>U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform b
           protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 309 SNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQD 488
           +  + +   A +Y +E  YE+ALKIL + +  ++       +      DL + Q+  L +
Sbjct: 414 TERVLMDALAHLYLYERKYESALKILMSCQDFQI----FNVIDKHQLFDLVKDQITELMN 469

Query: 489 IEDDGTLR 512
           I  +  LR
Sbjct: 470 INSERALR 477


>U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform a
           protein.
          Length = 759

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 309 SNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQD 488
           +  + +   A +Y +E  YE+ALKIL + +  ++       +      DL + Q+  L +
Sbjct: 414 TERVLMDALAHLYLYERKYESALKILMSCQDFQI----FNVIDKHQLFDLVKDQITELMN 469

Query: 489 IEDDGTLR 512
           I  +  LR
Sbjct: 470 INSERALR 477


>U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform c
           protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 309 SNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQD 488
           +  + +   A +Y +E  YE+ALKIL + +  ++       +      DL + Q+  L +
Sbjct: 462 TERVLMDALAHLYLYERKYESALKILMSCQDFQI----FNVIDKHQLFDLVKDQITELMN 517

Query: 489 IEDDGTLR 512
           I  +  LR
Sbjct: 518 INSERALR 525


>AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical
           protein F31F4.17 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = -2

Query: 368 FIIIFMIVNCCSHNQEYFIGQFRTFSYSSINISNNGRFLASGSK*STKLFNGCSIGSAVF 189
           FII+F   NC ++ +E  +     +  + IN + + R+L      S+ L + C +G+ +F
Sbjct: 48  FIILFFAYNCLTYKKEDLLA--NPYPPAVINFNTSSRYL------SSNLASVCQLGNNIF 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,908,359
Number of Sequences: 27780
Number of extensions: 294564
Number of successful extensions: 712
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)