Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30564
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30630.1 68414.m03746 coatomer protein epsilon subunit family...    67   9e-12
At2g34840.1 68415.m04278 coatomer protein epsilon subunit family...    61   6e-10
At1g70120.1 68414.m08069 hypothetical protein                          29   3.9  

>At1g30630.1 68414.m03746 coatomer protein epsilon subunit family
           protein / COPE family protein similar to SP|O14579
           Coatomer epsilon subunit (Epsilon-coat protein)
           (Epsilon-COP) from Homo sapiens, SP|Q60445 from
           Cricetulus griseus; ESTs gb|Z17908, gb|AA728673,
           gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611,
           gb|T21160, gb|T14119 and AI100483 come from this gene
          Length = 292

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 32/99 (32%), Positives = 59/99 (59%)
 Frame = +3

Query: 213 AIEEFGRLLTT*CQKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHN 392
           A++     L++   K + ++ +   +A  T  +N I  ++A TI+ HE++Y  ALK  H+
Sbjct: 73  AVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEALKHTHS 132

Query: 393 AESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTL 509
             +++L A  +Q  + M+R D A KQL+++Q I++D TL
Sbjct: 133 GGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTL 171



 Score = 35.1 bits (77), Expect = 0.045
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +2

Query: 509 TQLAQAWLNLIQGGPGIQDAHYSVMELSE 595
           TQLA AWLNL  GG  IQ+A+    + SE
Sbjct: 172 TQLASAWLNLAVGGSKIQEAYLIFQDFSE 200



 Score = 32.3 bits (70), Expect = 0.32
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +2

Query: 20 DELFDVKNAFYVGNYQQAINEAQ 88
          D LF+++N FY+G YQ AIN ++
Sbjct: 8  DHLFNLRNHFYLGAYQAAINNSE 30



 Score = 32.3 bits (70), Expect = 0.32
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 118 LQRDAFLYRSYIAQGNYRIVQQEL-KTADPMLQPLKSLVDY 237
           ++RD  ++R+YIA G+Y++V  E+ + A   LQ +K L  Y
Sbjct: 40  VERDCLVHRAYIALGSYQLVISEIDEAAATPLQAVKLLAMY 80


>At2g34840.1 68415.m04278 coatomer protein epsilon subunit family
           protein / COPE family protein similar to SP|O14579
           Coatomer epsilon subunit (Epsilon-coat protein)
           (Epsilon-COP) from Homo sapiens, SP|Q60445 from
           Cricetulus griseus
          Length = 293

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 29/99 (29%), Positives = 56/99 (56%)
 Frame = +3

Query: 213 AIEEFGRLLTT*CQKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHN 392
           A++     L+T   K + ++ +   +A  T  +N+   ++A  I+ HE++Y   LK  H 
Sbjct: 74  AVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETLKHTHA 133

Query: 393 AESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTL 509
             +++L A  +Q  + M+R + A KQL+++Q I++D TL
Sbjct: 134 GGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTL 172



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = +1

Query: 103 TPLVALQRDAFLYRSYIAQGNYRIVQQEL-KTADPMLQPLKSLVDY 237
           +P  A++RD  ++RSYIA G+Y++V  E+ ++A   LQ +K L  Y
Sbjct: 36  SPENAVERDCLVFRSYIALGSYQLVISEIDESAATPLQAVKLLAMY 81



 Score = 34.3 bits (75), Expect = 0.079
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +2

Query: 509 TQLAQAWLNLIQGGPGIQDAHYSVMELSE 595
           TQLA AWLNL  GG  IQ+A+    + SE
Sbjct: 173 TQLASAWLNLAVGGSKIQEAYLIFEDFSE 201



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 20  DELFDVKNAFYVGNYQQAINEAQSVTL 100
           D LF+++N FY+G YQ AIN ++   L
Sbjct: 9   DHLFNLRNNFYLGAYQTAINNSEIANL 35


>At1g70120.1 68414.m08069 hypothetical protein
          Length = 193

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = -3

Query: 340 VAATIKNISLDSSVPLATRASISATMADFWHQVVSNLPNSSMAVA*DLQS 191
           VA  I+  S+D +V   T+  +SA   D   +V SNLPN+ + +  D+Q+
Sbjct: 41  VAPNIEIASMDFTVRNITQTRLSANW-DLLIRVPSNLPNAYICLQGDIQA 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,925,824
Number of Sequences: 28952
Number of extensions: 268100
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)