Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30562X
         (492 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5BJQ2 Cluster: Putative uncharacterized protein; n=2; ...    32   6.0  
UniRef50_A2Q5Z3 Cluster: Fibronectin, type III-like fold; n=4; M...    32   6.0  
UniRef50_A0DR56 Cluster: Chromosome undetermined scaffold_6, who...    32   8.0  

>UniRef50_A5BJQ2 Cluster: Putative uncharacterized protein; n=2;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 634

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 268 EMLSRQKSWFIIAYQPQSPLSSEFIITFDSSCVTLCCK 155
           E+ +  + WF+   Q    +S+E  I ++ SC TLC K
Sbjct: 504 ELRNLLQKWFVTRQQQAMSISTELTIFYNISCYTLCSK 541


>UniRef50_A2Q5Z3 Cluster: Fibronectin, type III-like fold; n=4;
           Magnoliophyta|Rep: Fibronectin, type III-like fold -
           Medicago truncatula (Barrel medic)
          Length = 308

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = -3

Query: 418 QKQSLVQHHYIITYRNPELLQYY----SPSH*CILL*GKYVIKIKQKTPAGTQSEMLSRQ 251
           Q   LV    ++ + NPE   +Y    S  H C    G   I + ++TP G   E LS+ 
Sbjct: 167 QSVELVSGDLVLNHGNPEWWSFYDLDISDEHGCGKFPGPMAIIVSEETPQGILGETLSKF 226

Query: 250 KSW 242
             W
Sbjct: 227 SIW 229


>UniRef50_A0DR56 Cluster: Chromosome undetermined scaffold_6, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_6,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 215

 Score = 31.9 bits (69), Expect = 8.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 228 YAMMNQLFCLDNISDCVPAGVFCFIFITYF 317
           + +++  +CLD I +C   G FC+I   YF
Sbjct: 123 FILLSCSYCLDYIYNCTILGAFCYIMCLYF 152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,302,688
Number of Sequences: 1657284
Number of extensions: 7409519
Number of successful extensions: 18224
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18217
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)