Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30562X
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   4.7  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   4.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.2  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   8.2  

>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 322 KVKCISVRESSIVKVQDSCMLLCNDAVLN 408
           KV CIS  +  IVKV DS + L  D  +N
Sbjct: 140 KVVCISTAKVPIVKVWDSELQLSCDCNIN 168


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 441 DVPCGREYKSKV*YSIIT**HTGILNFYNT 352
           DVP  + YKS   +S++   H    N YN+
Sbjct: 332 DVPHDKSYKSNYLFSVVLSPHQASWNIYNS 361


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 492 LIQDCRYKSEFQQYVRADV 436
           LIQ C ++ EF+QY ++ V
Sbjct: 82  LIQSCAHRDEFKQYAQSCV 100


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 319 GKYVIKIKQKTPAGTQSEMLS 257
           GK+V K+  KTP    SE+L+
Sbjct: 447 GKHVSKLSDKTPLSIVSELLN 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,845
Number of Sequences: 5004
Number of extensions: 33940
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)