Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30562X
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1121 + 34262019-34262040,34262144-34262211,34262909-342630...    27   6.2  
07_01_1157 + 10954619-10954835,10956078-10957114                       27   8.2  

>02_05_1121 +
           34262019-34262040,34262144-34262211,34262909-34263067,
           34263146-34263313,34264125-34264278,34264845-34264924,
           34265567-34265839,34265956-34266099,34266750-34266884,
           34266994-34267092,34267530-34267586,34267673-34267877,
           34268159-34268277,34268779-34268877,34268964-34269203
          Length = 673

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = -3

Query: 433 MWPRIQKQSLV---QHHYIITYRNPEL---LQYYSPSH*CILL*GKYVIKIK 296
           M  R+ KQ LV   +H Y + YR   L   L  YSPS  C++    YV+ +K
Sbjct: 455 MCMRVSKQLLVWTQEHTYWVAYRFLILGFELDLYSPSEYCMVYWYMYVVLMK 506


>07_01_1157 + 10954619-10954835,10956078-10957114
          Length = 417

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 189 HSIHHV*PYVVSVSKNNSQTSYNII 115
           HS  ++ P++VS+S  NS  S  II
Sbjct: 91  HSFLYISPFIVSISNKNSNISAKII 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,136,477
Number of Sequences: 37544
Number of extensions: 189813
Number of successful extensions: 429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)