Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30562X
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)                  30   1.2  
SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41)                    27   6.4  
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            27   8.4  

>SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)
          Length = 553

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 316 KYVIKIKQKTPAGTQSEMLSRQKSWFIIAYQPQSPLSSEFIITFDSS 176
           KY++K  +K P G + EML  +    I+     +P++ + I T D S
Sbjct: 504 KYIVKQLKKIPEGYRKEMLKLELQQCIMKAMMPAPVARQPIATIDFS 550


>SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41)
          Length = 366

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 94  HIAKCVRRNKIYRITCIKKKTDSRGF 17
           H+A C+RR +I   T ++K  ++ GF
Sbjct: 210 HLADCLRRKQILTTTAVRKTFNTVGF 235


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 193 ITFDSSCVTLCCKCVKKQ 140
           +T D SCVTL   CVK Q
Sbjct: 511 VTLDPSCVTLDLSCVKAQ 528


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,041,096
Number of Sequences: 59808
Number of extensions: 260854
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)