Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30562X
         (492 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei...    29   2.2  
At5g49780.1 68418.m06165 leucine-rich repeat transmembrane prote...    28   3.9  

>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 455

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 335 MHFTLREICNKNKAKNSSRNTVGNVVETKK 246
           ++FT  + C K KAK   + ++ N+VE KK
Sbjct: 348 LNFTRNQSCLKCKAKGPKKTSMVNIVEMKK 377


>At5g49780.1 68418.m06165 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1006

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 178 SCVTLCCKCVKKQQSNFLQYNNYC*N 101
           SC+T+ CKC   +++ FL Y+  C N
Sbjct: 22  SCLTILCKCFVSEEAVFL-YSRLCHN 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,461,200
Number of Sequences: 28952
Number of extensions: 167752
Number of successful extensions: 424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)