Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30561X
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 33 0.025
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 29 0.30
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 0.92
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 27 1.2
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 2.1
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 2.8
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 26 2.8
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 26 3.7
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 3.7
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 4.9
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 4.9
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 25 6.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 6.5
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 8.6
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.6
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 25 8.6
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 8.6
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 33.1 bits (72), Expect = 0.025
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = +2
Query: 233 RPRSSWKREEDLPVHPHQAADHRGSLRRQTPTEGP--GTLGVHRQTRDREIRSRREAKET 406
+P S + ++ V +++ +R G GTLG +Q +RE +S R+ K
Sbjct: 45 QPEGSMEEDDHRQVKEKNTSENSVEQKRGRRMFGALLGTLGKFQQESEREQKSARKVKRA 104
Query: 407 GLRLKRARRKTKQQLRHKALKKGLDPEALTGK 502
L K A+R+ +Q+L+ ++ ++ E L +
Sbjct: 105 ELEEKLAKRR-EQELQELEKQEKIEAEILESR 135
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 29.5 bits (63), Expect = 0.30
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +1
Query: 82 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 255
EEKR+++EE++K + +LQA + K N + KKS + + E+ K+ + +E
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKS----IRRKEKEKKKSSDAWKE 189
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.9 bits (59), Expect = 0.92
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 252
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 636 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEENAKREAEEKVKRETE 694
Query: 253 E 255
E
Sbjct: 695 E 695
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 252
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 620 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEENAKREAEEKAKREAE 678
Query: 253 E 255
E
Sbjct: 679 E 679
Score = 25.4 bits (53), Expect = 4.9
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 252
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 572 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 253 E 255
E
Sbjct: 631 E 631
Score = 25.0 bits (52), Expect = 6.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 252
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 604 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 662
Query: 253 E 255
E
Sbjct: 663 E 663
Score = 25.0 bits (52), Expect = 6.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLE 252
+ EEK +R E + KR+A +A ++A + +K K E + + E N +E E
Sbjct: 612 EAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEE 671
Query: 253 E 255
+
Sbjct: 672 K 672
Score = 24.6 bits (51), Expect = 8.6
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 252
+ EEK +R E + KR+A A ++A + ++K++ A+ E K K + E
Sbjct: 580 EAEEKAKREAEEKAKREAEENAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 638
Query: 253 E 255
E
Sbjct: 639 E 639
Score = 24.6 bits (51), Expect = 8.6
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 252
+ EEK +R E KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 588 EAEEKAKREAEENAKREAEEKAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAKREAE 646
Query: 253 E 255
E
Sbjct: 647 E 647
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 27.5 bits (58), Expect = 1.2
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 279 RIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYD----LEERQKRQDYDLKELEERQS 443
++ P ++ D + + E + ++E EK + +E Q+R++ LKE+EE +S
Sbjct: 137 QLTPTRVDAFQPDGTQSNGRSYAEVMRQVELEKEERRVHMELNQRRREGTLKEVEEEES 195
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 166 PNFTIQKKSENFGLSNAQLERNKTKEQL 249
P FTI++K +NF ++N ERN ++L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKL 514
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 317 QTPTEGPGTLGVHRQTRDREIRSRREAK 400
++ T+G GT V + TR + RSRR+ +
Sbjct: 203 ESSTKGNGTFTVSKTTRKNQPRSRRDPR 230
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/40 (25%), Positives = 26/40 (65%)
Frame = +3
Query: 360 KLETEKYDLEERQKRQDYDLKELEERQSSN*GTKLSRRVS 479
KLETEK + ++++++ + K+ ++ + + TK +++S
Sbjct: 173 KLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKIS 212
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 345 WECIVKLETEKYDLEERQKRQDYDLKELEERQSSN*GTKLS 467
W C+ E ++E Q +DYD L+ ++ + G ++S
Sbjct: 14 WRCLGSEGNELIYIDEEQTWKDYDPNSLKMNKAGSTGAEVS 54
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +3
Query: 360 KLETEKYDLEERQKR---QDYDLKELEERQ 440
KLE E+ L+E+Q+R +D L+E EE Q
Sbjct: 129 KLEKERIRLQEQQRRKEERDQKLREKEEAQ 158
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 4.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 194 SLFFWMVKLGPVLLASFMAWSIAW 123
SL+FW L P +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.4 bits (53), Expect = 4.9
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +1
Query: 88 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 255
K + +++R A +QA+ D S +T + + +SEN GL N ++ +QLE+
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQ 290
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.0 bits (52), Expect = 6.5
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Frame = +2
Query: 194 KTSV*AMPSWSATRPRSSWKREEDLPVHPHQAADHRGSL---RRQTPTEGPGTLGVHRQT 364
KT++ +P WS RP+ W + L + R +L + + L + +
Sbjct: 36 KTTI--LPRWSFGRPKRPWSCTQHLRKTRTVIIEKRATLEEVKERMEYWRRQLLEPEKGS 93
Query: 365 RDREIRSRREAKETGLRLKRARRKTKQQLRHK 460
+ ++ R E L K+ RRK K+ + K
Sbjct: 94 EEYSLKERVERYHQELEAKKLRRKQKKVNKEK 125
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 348 ECIVKLETEKYDLEERQKRQDYDLKELEERQSSN 449
E + + E K +LE + + +KELEE+ N
Sbjct: 1598 ELVAEKEKTKEELENQLNEKSQRIKELEEQAQKN 1631
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 380 VFLGLEFDDALPEFLGLLSEFVDGETL 300
VF+ + ++ +PE+LG + VD E L
Sbjct: 343 VFITDDCEELIPEWLGFIKGVVDSEDL 369
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 323 EFVDGETLDGQRLDA 279
E DGET+DGQ+ +A
Sbjct: 380 EIEDGETMDGQKAEA 394
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 8.6
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 79 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLE 252
+ EK+ + K A ++A + ASK+G T S+N L + +R + K E
Sbjct: 116 LHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRE 173
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 76 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 243
++EEK LE A+ Q ++ ++KD +K + ++ G+S+A ++ K +
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSALSKKKKKRN 221
Query: 244 Q 246
+
Sbjct: 222 R 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.300 0.115 0.292
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,694
Number of Sequences: 5004
Number of extensions: 23598
Number of successful extensions: 107
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)
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