Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30561X
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 33 0.13
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317... 31 0.40
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 31 0.40
08_02_0292 - 15420378-15421229 31 0.53
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 31 0.53
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 30 1.2
03_06_0155 - 32031370-32031707,32033066-32033279 29 2.1
02_01_0026 - 165640-166185 29 2.1
11_01_0284 + 2107562-2107811,2107928-2108208,2108589-2109413 28 5.0
05_04_0158 + 18613265-18615304 28 5.0
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 27 6.5
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 27 6.5
08_01_0397 - 3509186-3510291,3510322-3512335 27 8.7
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128... 27 8.7
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 27 8.7
02_04_0531 + 23707978-23709021 27 8.7
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 33.1 bits (72), Expect = 0.13
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +2
Query: 251 KREEDLPVHPHQAADHRGSL-RRQTPTEGPGTLGVHRQTRDREIRSRREAKETGLRLKRA 427
K + D+ P + + +L RRQ E R ++ E R ++E +E + + A
Sbjct: 413 KGKVDMKKLPKHVREMQEALARRQEAEERKKREEEERLRKEEEERLKKEEEER--KAEEA 470
Query: 428 RRKTKQQLRHKALKKGLDPEALTGK 502
+R+ K++ + K LKK + + LTGK
Sbjct: 471 KRRKKEREKEKLLKKKQEGKLLTGK 495
>12_02_0847 +
23630937-23631099,23631200-23631396,23631604-23631738,
23631904-23632077,23632195-23632407,23632507-23632751,
23632890-23632930,23633200-23633238,23633552-23633565
Length = 406
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 76 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 255
+I E+R+R + ++ A+L+AMK+ N ++ E N +LE K+QL+E
Sbjct: 41 EIAEERERFQLEQRGNDALLEAMKE-ELVAANNELEAAKEEISRKNNELE--SVKKQLQE 97
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 380 VFLGLEFDDALPEFLGLLSEFVDGETL 300
VF+ EFD+ LP++L L VD +TL
Sbjct: 451 VFISDEFDELLPKYLSFLKGLVDSDTL 477
>08_02_0292 - 15420378-15421229
Length = 283
Score = 31.1 bits (67), Expect = 0.53
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 287 AADHRGSLRRQTPTEGPGTLGVHRQTRDREIRSRREAKETGLRLKRARRKTKQQ 448
AA RR+ T G G +TR R R R E + +G R RR+T Q+
Sbjct: 25 AAAEPSGRRRELTTSGGGRSRRRSRTRRRRARRRGEERSSGGGRSRMRRRTWQR 78
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +1
Query: 85 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 255
E+ ++ ++ + AMLQ +KD N +Q+K ++ ++E +TK Q +E
Sbjct: 1431 EEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDE 1487
>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 164 DPTSPSKRRAKTSV*AMPSWSA--TRPRSSWKREEDLPVHPHQAADHRGSLRRQTPTEGP 337
+P PS R+ +S A PS++ +RP +S + ++ P Q + H G R PT+G
Sbjct: 1161 NPAEPS-RQWSSSAHAQPSYNPEPSRPWNSGHQSQN-PEASRQWSHHHGKQERYNPTDGR 1218
Query: 338 GTLGVH 355
+ H
Sbjct: 1219 NSYDQH 1224
>03_06_0155 - 32031370-32031707,32033066-32033279
Length = 183
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 79 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 255
IEE +QR EEA + +Q + +A K + + + G+ + R K+ E L E
Sbjct: 98 IEELKQREEEATQAQQQADVKLLEAKKLASQYQKEADKCSSGMDTCEEAREKSSEALVE 156
>02_01_0026 - 165640-166185
Length = 181
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -2
Query: 468 LRALCLSCCFVFLRALLSRSPVSFASLRDRISRSRV*RCTPRVPGPSVGVC 316
+ LC S CF+F+ +++ SP + A+ + I +C+ P + +C
Sbjct: 1 MATLCGSVCFLFVIMVIASSPAAVAAAGEDIVEETCGQCSRSNPNVNYTLC 51
>11_01_0284 + 2107562-2107811,2107928-2108208,2108589-2109413
Length = 451
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 356 RQTRDREIRSRREAKETGLRLKR-ARRKTKQQ 448
+QT +RE ++R E K R K+ ARRK QQ
Sbjct: 189 KQTYEREEKAREEQKNDNKRNKKAARRKNMQQ 220
>05_04_0158 + 18613265-18615304
Length = 679
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +1
Query: 82 EEKRQRLEEAEKKRQAML-----QAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 246
+EK ++ +E E K Q L +AMK KTG N I+KK ++ + + +++
Sbjct: 608 QEKVEKNQEKEMKIQEKLGEIFDKAMKSEEKTGQNPGIEKKIQDTAEKKQEHDARVVQDK 667
Query: 247 LEE 255
+E+
Sbjct: 668 VEK 670
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 356 RQTRDREIRSRREAKETGLRLKRARRKTKQQLRHKALKK 472
R+ R + + RRE +E L+ RRK ++ R +AL++
Sbjct: 216 REARHKAEQERREREELDRMLEENRRKVEEAQRKEALEQ 254
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +2
Query: 149 MPARPDPTSPSKRRAKTSV*AMPSWSATRPRSSWKREEDLPVHPHQAADHRGSLRRQTPT 328
+PA P P RR + + +P+++ + + LP P A R L R+ +
Sbjct: 397 LPAIPSPAGLRPRRRRPRRPGGGELTGEKPQTASGKPKKLPRRPSGLARLRKPLGRRPDS 456
Query: 329 EGPGTLGVHR 358
GP + V R
Sbjct: 457 AGPRSPSVRR 466
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 356 RQTRDREIRSRRE---AKETGLRLKRARRKTKQQLRHKALKKGLDPE 487
R+ RDRE RSRR A+E + R R++ ++ H + +PE
Sbjct: 91 REERDREERSRRREAAAEEEEEDVDRDRKRRRRSSHHHHHHRDAEPE 137
>04_01_0123 -
1283197-1283292,1283330-1284439,1284790-1285177,
1285523-1287609
Length = 1226
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 453 LSCCFVFLRALLSRSPVSFASLRD 382
LS C VFL A+ + SP S+ +RD
Sbjct: 116 LSSCKVFLSAIKALSPKSYVPIRD 139
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 297 IEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEERQ 440
+E L +DK R+ EL + VK+ + LEE +K+ + EE+Q
Sbjct: 386 LEALLLDKNRKMEHELTQLKVKISEKSNLLEEAEKKIAELTAKAEEQQ 433
>02_04_0531 + 23707978-23709021
Length = 347
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 152 PARPDPTSPSKRRAKTSV*AMPSWSATRPRSSWKREEDLPVHPHQAAD 295
P P P SP R T V +P + P + +E +PV P Q AD
Sbjct: 32 PLAPPPDSP--RTPHTYVGFLPVFGDLPPLTGAVLQEPVPVPPEQRAD 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.300 0.115 0.292
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,940,645
Number of Sequences: 37544
Number of extensions: 179948
Number of successful extensions: 605
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)
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