Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30561X
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 61 5e-10
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 61 5e-10
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 59 2e-09
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 59 2e-09
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 58 4e-09
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 52 2e-07
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 52 2e-07
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 49 2e-06
U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t prot... 35 0.029
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 32 0.21
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 32 0.21
Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical pr... 31 0.48
Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical pr... 30 0.84
L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical p... 29 1.5
U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical pr... 29 2.6
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 2.6
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 29 2.6
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 29 2.6
AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical ... 29 2.6
U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical pr... 28 3.4
AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical... 28 3.4
Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical p... 28 4.5
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 28 4.5
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 28 4.5
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 28 4.5
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 28 4.5
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z68108-2|CAA92135.1| 406|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 27 5.9
AF025458-4|AAB70975.4| 374|Caenorhabditis elegans Hypothetical ... 27 5.9
Z71262-4|CAA95814.1| 775|Caenorhabditis elegans Hypothetical pr... 27 7.8
U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical pr... 27 7.8
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 27 7.8
AF408761-1|AAO27840.1| 741|Caenorhabditis elegans Rap1GAP protein. 27 7.8
AF016660-3|AAN84803.1| 376|Caenorhabditis elegans Hypothetical ... 27 7.8
AF016660-2|AAB66048.2| 811|Caenorhabditis elegans Hypothetical ... 27 7.8
AF016660-1|AAK71368.1| 742|Caenorhabditis elegans Hypothetical ... 27 7.8
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 60.9 bits (141), Expect = 5e-10
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = +3
Query: 297 IEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEERQSSN*GTKLSRRV 476
+ GL + L+++ + L IVKLE EKYDLE+R++RQDYD+KEL ERQ K ++
Sbjct: 224 VSGLLPNDLKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARNKALKKG 283
Query: 477 STPKRSQAS 503
P+ + +S
Sbjct: 284 LDPEEAASS 292
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 60.9 bits (141), Expect = 5e-10
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = +3
Query: 297 IEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEERQSSN*GTKLSRRV 476
+ GL + L+++ + L IVKLE EKYDLE+R++RQDYD+KEL ERQ K ++
Sbjct: 224 VSGLLPNDLKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARNKALKKG 283
Query: 477 STPKRSQAS 503
P+ + +S
Sbjct: 284 LDPEEAASS 292
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = +3
Query: 258 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEER 437
K+ L++ K + L + L+++ + + IVKLE EKYDLE+R++RQ+YDLKEL ER
Sbjct: 116 KRAFLNVVCKAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLKELNER 175
Query: 438 QSSN*GTKLSRRVSTPKRSQAS 503
Q K ++ P+ + +S
Sbjct: 176 QRQVARNKALKKGLDPEEAASS 197
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = +3
Query: 258 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEER 437
K+ L++ K + L + L+++ + + IVKLE EKYDLE+R++RQ+YDLKEL ER
Sbjct: 220 KRAFLNVVCKAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLKELNER 279
Query: 438 QSSN*GTKLSRRVSTPKRSQAS 503
Q K ++ P+ + +S
Sbjct: 280 QRQVARNKALKKGLDPEEAASS 301
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 58.0 bits (134), Expect = 4e-09
Identities = 26/41 (63%), Positives = 34/41 (82%)
Frame = +3
Query: 318 KLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEERQ 440
+L+ K +EL + I KLETEKYDLE+R +RQ+YD+KEL ERQ
Sbjct: 1051 ELKAKIKELHQRICKLETEKYDLEKRHERQEYDMKELNERQ 1091
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 359 QTRDREIRSRREAKETGLRLKRARRKTKQQLRHKALKKGLDP 484
+T ++ R E +E + K + +Q R+ ALKKG+DP
Sbjct: 1067 ETEKYDLEKRHERQEYDM--KELNERQRQVTRNSALKKGIDP 1106
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = +3
Query: 321 LRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEER 437
++ K +EL + I KLE +KYDLE+R +RQ+YDLKEL ER
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEYDLKELNER 254
Score = 38.3 bits (85), Expect = 0.003
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Frame = +1
Query: 82 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSN-------AQLERNKTK 240
EE+++R EE + K+ M+ + G NF IQKK E+ G+ + A+ E TK
Sbjct: 128 EEEKKRKEEEKLKKAQMMGGGFPGQQGGRNFVIQKKEESAGVGDRFGNIVQAKQEMGMTK 187
Query: 241 EQLEE 255
EQ EE
Sbjct: 188 EQQEE 192
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = +3
Query: 321 LRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEER 437
++ K +EL + I KLE +KYDLE+R +RQ+YDLKEL ER
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEYDLKELNER 254
Score = 38.3 bits (85), Expect = 0.003
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Frame = +1
Query: 82 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSN-------AQLERNKTK 240
EE+++R EE + K+ M+ + G NF IQKK E+ G+ + A+ E TK
Sbjct: 128 EEEKKRKEEEKLKKAQMMGGGFPGQQGGRNFVIQKKEESAGVGDRFGNIVQAKQEMGMTK 187
Query: 241 EQLEE 255
EQ EE
Sbjct: 188 EQQEE 192
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 48.8 bits (111), Expect = 2e-06
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +3
Query: 318 KLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKEL 428
+L+ K +EL + I KLETEKYDLE+R +RQ+YD K+L
Sbjct: 217 ELKAKIKELHQRICKLETEKYDLEKRHERQEYDPKQL 253
>U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t protein
3, isoform c protein.
Length = 279
Score = 35.1 bits (77), Expect = 0.029
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 227 ATRPRSSWKREEDLPVHPHQAADHR-GSLRRQTPTEGPGTLGVHRQTRDREIRSRREAKE 403
A R R S ++ +P Q R S ++ + G + QTRDRE+RSR ++
Sbjct: 195 AKRTRLSSRKPSGIPCGNSQRNTKRIRSSTKRAEGQDKGASSENMQTRDREVRSRETSRT 254
Query: 404 TGLRLKRARR 433
+R +RA+R
Sbjct: 255 ARVRHERAQR 264
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 32.3 bits (70), Expect = 0.21
Identities = 18/80 (22%), Positives = 40/80 (50%)
Frame = +3
Query: 255 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEE 434
++++ K E L +++ ++KA E+ +++++ E+ L + Q R + + K+ E
Sbjct: 13555 KQRLESEAATKKADAEKLKLEEQKKKAAEI--ALIEIQKEQEKLAQEQSRLEDEAKKSAE 13612
Query: 435 RQSSN*GTKLSRRVSTPKRS 494
+Q TK + PK S
Sbjct: 13613 KQKLESETKSKQTEEAPKES 13632
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +3
Query: 255 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEE 434
++K+ K E L +++ ++K E + E EK L + Q + + D K+ E
Sbjct: 9922 KQKLESEAATKKAAAEKLKLEEQKKKDAETASIEKQKEQEK--LAQEQSKLEVDAKKSAE 9979
Query: 435 RQSSN*GTKLSRRVSTPKRS 494
+Q TK + PK S
Sbjct: 9980 KQKLESETKSKKTEEAPKES 9999
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 32.3 bits (70), Expect = 0.21
Identities = 18/80 (22%), Positives = 40/80 (50%)
Frame = +3
Query: 255 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEE 434
++++ K E L +++ ++KA E+ +++++ E+ L + Q R + + K+ E
Sbjct: 13555 KQRLESEAATKKADAEKLKLEEQKKKAAEI--ALIEIQKEQEKLAQEQSRLEDEAKKSAE 13612
Query: 435 RQSSN*GTKLSRRVSTPKRS 494
+Q TK + PK S
Sbjct: 13613 KQKLESETKSKQTEEAPKES 13632
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +3
Query: 255 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEE 434
++K+ K E L +++ ++K E + E EK L + Q + + D K+ E
Sbjct: 9922 KQKLESEAATKKAAAEKLKLEEQKKKDAETASIEKQKEQEK--LAQEQSKLEVDAKKSAE 9979
Query: 435 RQSSN*GTKLSRRVSTPKRS 494
+Q TK + PK S
Sbjct: 9980 KQKLESETKSKKTEEAPKES 9999
>Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical
protein F18E2.2 protein.
Length = 622
Score = 31.1 bits (67), Expect = 0.48
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 350 VHRQTRDREIRSRREAKETGLRLKRARRKTKQQLRHKALKKG 475
VH + D++ + + K+ G K+A + KQQ+ +KA K G
Sbjct: 322 VHEKNFDQQQKQLKAMKKEGKSAKQAEEQVKQQMANKAKKGG 363
>Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical
protein C33D9.8 protein.
Length = 604
Score = 30.3 bits (65), Expect = 0.84
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Frame = +3
Query: 261 KISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDY------DLK 422
++ LS L + L ++K+ +K + L E VK + Y+LE+ + +DY D K
Sbjct: 249 QVKLSEASAQLNEKDLVIEKITRKIELLQENNVKKDQRIYELEQCFESEDYCKILQKDTK 308
Query: 423 ELEE 434
ELEE
Sbjct: 309 ELEE 312
>L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical
protein F44E2.3 protein.
Length = 244
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 365 RDREIRSRREAKETGLRLKRARRKTKQQLRHKA 463
RDRE R RRE ++ KR R+ +++ RH++
Sbjct: 14 RDREERKRREDRDRDRERKRDRKDRERKRRHRS 46
>Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical
protein C54D10.12 protein.
Length = 500
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +1
Query: 82 EEKRQRLEEAEKKRQAMLQAMKDAS------KTGPNFTIQKKSENFGLSNAQLERNKTKE 243
EEK Q++ E E+K Q +L K+ + + + I++K E N Q R K E
Sbjct: 208 EEKLQQIREKERKLQELLLRQKEEAEEEALRRLANDSEIEQKLEKIRYENEQQARQKDNE 267
Query: 244 Q 246
Q
Sbjct: 268 Q 268
>U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical
protein F27C1.6 protein.
Length = 647
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 76 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLER 228
D E+ ++ ++E EK + L S GP T +K+ +NF + + R
Sbjct: 514 DFEDMKEGVKEKEKVKDVDLNLAGWGSWVGPGMTEKKRRQNFVIKAKEKRR 564
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +3
Query: 255 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEE 434
++K+ K E L +++ ++K E + E EK L + Q + + D K+ E
Sbjct: 9902 KQKLESEAATKKAAAEKLKLEEQKKKDAETASIEKQKEQEK--LAQEQSKLEVDAKKSAE 9959
Query: 435 RQSSN*GTKLSRRVSTPKRS 494
+Q TK + PK S
Sbjct: 9960 KQKLESETKSKKTEEAPKES 9979
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/54 (22%), Positives = 31/54 (57%)
Frame = +1
Query: 82 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE 243
+EK+Q+L+E EK+R+ + Q ++ ++ +E+ +++ ++ K +E
Sbjct: 216 KEKKQKLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDEEDSRKDQRKPRE 269
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 281 HQAADHRGSLRRQTPTEGPGTLGVHRQTRDRE-IRSRREAKETGLRLKRARRKTKQQLRH 457
H+ R R+++ + P HR+ RDR+ R RR ++T R R K + +
Sbjct: 9 HKRKRSRSKERKRSRSRSPRGSREHREHRDRDRDRERRRERDTDREKTRDREKQRDAEKK 68
Query: 458 K 460
K
Sbjct: 69 K 69
>AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical
protein K09F6.9 protein.
Length = 609
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 363 LETEKYDLEERQKRQDYDLKELEERQ 440
LE EK +LEE+QK+++ + E E R+
Sbjct: 326 LEKEKRELEEKQKKENLERVEKERRE 351
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 363 LETEKYDLEERQKRQDYDLKELEERQ 440
LE EK +LEE+QK+++ + +ER+
Sbjct: 366 LEKEKRELEEKQKKENLERATQKERE 391
>U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical
protein T05A12.3 protein.
Length = 655
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 312 VDKLRQK-AQELWECIVKLETEKYDLEERQKRQDYDLKELEERQSSN*GTKLSRRVSTPK 488
VD++R++ + E E +LE EK +E Q+++ KEL +++ + + + PK
Sbjct: 15 VDRIREEVSNEKSEAQRQLEAEKRARQEMQRKKLEKEKELAKKRKEREEDERRKNFTIPK 74
Query: 489 RSQ 497
R++
Sbjct: 75 RNE 77
>AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical
protein Y38H6C.14 protein.
Length = 814
Score = 28.3 bits (60), Expect = 3.4
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +2
Query: 164 DPTSPSKRRAKTSV*AMPSWSATRPRSSWKREEDLPVHPHQAADHRGSLRRQTPTEGPGT 343
+ T+PS+ +SV ++ + S PR + HQ++ + R+Q P+ T
Sbjct: 173 ESTAPSQVSVTSSVQSVAALSGQNPRQQVHATPSHQIPRHQSSRTHQNSRQQVPSATSST 232
Query: 344 L--GVHRQTRDREIRSRREAKETGLRLKRARRKTK 442
L HR + S R A +R A T+
Sbjct: 233 LQNPRHRTSSASRHHSTRNATSATVRQILANASTR 267
>Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical
protein T18D3.1 protein.
Length = 523
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 353 HRQTRDREIRSRREAKETGLRLKRARRKTKQQLRHKALKKGLDPEALTGKHP 508
H +R R R+E KE + ++ + +Q+ RH+ ++G + K P
Sbjct: 472 HETEEERAERKRKEKKEKERQERKEKEHDEQKKRHRDNEEGAGSSSKRSKAP 523
>Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical
protein R107.6 protein.
Length = 1020
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 252 REKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVK 362
+E K SL +++ EGL D+L +L C++K
Sbjct: 924 QEPKASLVLKMMTRLFEGLQADELSPVVDDLAPCVIK 960
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 311 RRQTPTEGPGTLGVHRQTRDREIRSRREAKETGLRLKRAR 430
R + E VHRQ +RE +R+ +E RL+R R
Sbjct: 505 REEERREAELVADVHRQAEERERLRKRQEREEAERLERIR 544
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 311 RRQTPTEGPGTLGVHRQTRDREIRSRREAKETGLRLKRAR 430
R + E VHRQ +RE +R+ +E RL+R R
Sbjct: 505 REEERREAELVADVHRQAEERERLRKRQEREEAERLERIR 544
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 311 RRQTPTEGPGTLGVHRQTRDREIRSRREAKETGLRLKRAR 430
R + E VHRQ +RE +R+ +E RL+R R
Sbjct: 505 REEERREAELVADVHRQAEERERLRKRQEREEAERLERIR 544
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 311 RRQTPTEGPGTLGVHRQTRDREIRSRREAKETGLRLKRAR 430
R + E VHRQ +RE +R+ +E RL+R R
Sbjct: 505 REEERREAELVADVHRQAEERERLRKRQEREEAERLERIR 544
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 27.5 bits (58), Expect = 5.9
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 258 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELEER 437
K+++LS+R++ L +G V KL + E+ + K + L E+Q D LK + E
Sbjct: 2781 KRLTLSVRLERL--KG-GVSKLNEARDEVAKMQKKAGKKSKLLAEKQAEADEALKAITES 2837
Query: 438 QSSN*GTKLS 467
S KLS
Sbjct: 2838 MSGAEDQKLS 2847
>Z68108-2|CAA92135.1| 406|Caenorhabditis elegans Hypothetical
protein T05A10.3 protein.
Length = 406
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 360 KLETEKYDLEERQKRQDYDLKELEE 434
++E E++ LEE QKR D +++ LEE
Sbjct: 232 RIEEERFRLEEEQKRLD-EIRRLEE 255
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
F35G12.8 protein.
Length = 1549
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 79 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 255
+E+K++ +EE EKKR + + A IQ K + Q R++ KE L++
Sbjct: 869 LEDKQKIVEELEKKRDEL--GEEAAKVKARQAEIQSKLDGIFKELVQCHRDEAKESLQK 925
>AF025458-4|AAB70975.4| 374|Caenorhabditis elegans Hypothetical
protein C01B12.2 protein.
Length = 374
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +1
Query: 85 EKRQRLEEAEKKRQAMLQAMKDASKTGP----NFTIQKKSENFGLSNAQLERNKTKEQL 249
E ++R EEAE+K Q A+K +T N TIQ K+ L +E + L
Sbjct: 220 ENQKRQEEAERKLQEKQNAIKCLMETDSVTFWNQTIQSKTSTVVLDRISMELGSLAQNL 278
>Z71262-4|CAA95814.1| 775|Caenorhabditis elegans Hypothetical
protein F22D6.5 protein.
Length = 775
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 359 QTRDREIRSRREAKETGLRLKRARRKTKQQLRHKALKKGLDPEALTG 499
+ RDRE+R RR+A+ R R+ K ++ ++ K DP A G
Sbjct: 125 ERRDRELRERRDAE----RRDRSLSKERRLIQRKREDNRRDPRAHEG 167
>U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical
protein T24H7.2 protein.
Length = 925
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 76 DIEEKRQRLEE-AEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTK 240
D++E+++R+E AEK+R A +A + NF + E ++ + KTK
Sbjct: 672 DVQEEKRRMEAFAEKERLASERAAVENELESFNFECSQYLEETEFTDYMADEEKTK 727
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/16 (62%), Positives = 16/16 (100%)
Frame = +1
Query: 79 IEEKRQRLEEAEKKRQ 126
+EEK++RL+EA+KKR+
Sbjct: 543 LEEKKRRLQEAKKKRR 558
>AF408761-1|AAO27840.1| 741|Caenorhabditis elegans Rap1GAP protein.
Length = 741
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 354 IVKLETEKYDLEERQKRQDYDLKELEERQS 443
+ +L+ EK+DL + D+K+L++RQS
Sbjct: 668 VTRLQNEKHDLLRQNVSCKTDIKKLKDRQS 697
>AF016660-3|AAN84803.1| 376|Caenorhabditis elegans Hypothetical
protein F53A10.2b protein.
Length = 376
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 354 IVKLETEKYDLEERQKRQDYDLKELEERQS 443
+ +L+ EK+DL + D+K+L++RQS
Sbjct: 303 VTRLQNEKHDLLRQNVSCKTDIKKLKDRQS 332
>AF016660-2|AAB66048.2| 811|Caenorhabditis elegans Hypothetical
protein F53A10.2c protein.
Length = 811
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 354 IVKLETEKYDLEERQKRQDYDLKELEERQS 443
+ +L+ EK+DL + D+K+L++RQS
Sbjct: 738 VTRLQNEKHDLLRQNVSCKTDIKKLKDRQS 767
>AF016660-1|AAK71368.1| 742|Caenorhabditis elegans Hypothetical
protein F53A10.2a protein.
Length = 742
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 354 IVKLETEKYDLEERQKRQDYDLKELEERQS 443
+ +L+ EK+DL + D+K+L++RQS
Sbjct: 669 VTRLQNEKHDLLRQNVSCKTDIKKLKDRQS 698
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.300 0.115 0.292
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,966,254
Number of Sequences: 27780
Number of extensions: 139118
Number of successful extensions: 628
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)
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