Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30560X
         (438 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XMB4 Cluster: Putative uncharacterized protein; n=1; ...    34   1.2  
UniRef50_Q6LFD1 Cluster: Putative uncharacterized protein; n=1; ...    34   1.5  
UniRef50_A5K6T5 Cluster: WD domain, G-beta repeat domain contain...    33   2.7  
UniRef50_Q8EW66 Cluster: GTP-binding protein Era homolog; n=1; M...    33   3.5  
UniRef50_A4LW59 Cluster: Cytochrome C family protein precursor; ...    33   3.5  
UniRef50_Q90155 Cluster: RNA-dependent RNA polymerase; n=9; Tric...    32   6.2  
UniRef50_Q0UE57 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  
UniRef50_UPI00006CE64A Cluster: hypothetical protein TTHERM_0070...    31   8.1  
UniRef50_A7PX92 Cluster: Chromosome chr12 scaffold_36, whole gen...    31   8.1  
UniRef50_Q8IKX0 Cluster: Putative uncharacterized protein; n=1; ...    31   8.1  

>UniRef50_Q4XMB4 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 342

 Score = 34.3 bits (75), Expect = 1.2
 Identities = 18/47 (38%), Positives = 30/47 (63%)
 Frame = +2

Query: 89  NKTDSKSENTKKSEQQATEKVKIDIKLLDLYENSEPDVYVRTSTEEE 229
           NKT+ K+ N  +SE +  +K+KI +  LD+ +NS+ D   + ST+ E
Sbjct: 134 NKTNDKNNNNNRSENK--QKIKIHLSSLDMNDNSK-DTKKQDSTKNE 177


>UniRef50_Q6LFD1 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 4095

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 77   YELINKTDSKSENTKKSEQQATEKVK-IDIKLLDLYENSEPDVYVRTSTEEEHGHYSYL 250
            Y + N  + K++N   +++    KVK +  KL +LY N+    Y    ++++H +Y+ +
Sbjct: 1947 YNIKNNNNMKNKNKNTNKRDIIYKVKDLSCKLSELYNNTTDLTYNLNDSDDDHNNYNMM 2005


>UniRef50_A5K6T5 Cluster: WD domain, G-beta repeat domain containing
           protein; n=5; Plasmodium|Rep: WD domain, G-beta repeat
           domain containing protein - Plasmodium vivax
          Length = 846

 Score = 33.1 bits (72), Expect = 2.7
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
 Frame = +2

Query: 104 KSENTKKSEQQATEKVKI--DIKLLD-LY-ENSEPDVYVRTSTEEEHGHYSYLWQYPLP 268
           K E  KKS+++  +K +    +KL+D +Y +N+E ++Y+   +E      + LW + LP
Sbjct: 429 KDEKVKKSDEKILQKKRFLKTLKLMDRIYNKNNEEEIYLNYKSEMNKNILTKLWIFSLP 487


>UniRef50_Q8EW66 Cluster: GTP-binding protein Era homolog; n=1;
           Mycoplasma penetrans|Rep: GTP-binding protein Era
           homolog - Mycoplasma penetrans
          Length = 270

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +2

Query: 83  LINKTDSKSENTKKSEQQATEKVKIDIKLLDLYENSEPDVYVRTSTEEEH 232
           ++NK D KSE   K+ +Q+  K+     +L++   S+ DV V  +T +EH
Sbjct: 91  VLNKRDLKSEEEIKNAKQSISKMFDFTNVLEINSKSKEDVSVLLNTIKEH 140


>UniRef50_A4LW59 Cluster: Cytochrome C family protein precursor;
           n=1; Geobacter bemidjiensis Bem|Rep: Cytochrome C family
           protein precursor - Geobacter bemidjiensis Bem
          Length = 1143

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 156 LTSSS*TYTKILSQTSMYEHRPRKNTAITATCGNIHCH 269
           + S++    K+L+ T +Y   P++  + T  C NI+CH
Sbjct: 585 IASTAVHVNKMLNYTGLYAGGPKRYNSTTKVCSNIYCH 622


>UniRef50_Q90155 Cluster: RNA-dependent RNA polymerase; n=9;
           Trichomonas vaginalis virus|Rep: RNA-dependent RNA
           polymerase - Trichomonas vaginalis virus
          Length = 756

 Score = 31.9 bits (69), Expect = 6.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 134 QATEKVKIDIKLLDLYENSEPDVYVRTSTEEEHGHYSYLW 253
           Q T K  +DI  +D  +  +P V++R S + EHG   +++
Sbjct: 299 QPTRKEFLDIVTIDYIKQCKPQVFIRQSRKLEHGKERFIY 338


>UniRef50_Q0UE57 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 663

 Score = 31.9 bits (69), Expect = 6.2
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 438 RSSEQLLVYKAAVLFGAAGLT-HRCNNGTVVSELPGS 331
           R  E L    A V+FG  GL  H   +GT+ S+LPGS
Sbjct: 227 RGLEPLTTVPAGVVFGIGGLEGHVLKSGTLCSQLPGS 263


>UniRef50_UPI00006CE64A Cluster: hypothetical protein TTHERM_00709710;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00709710 - Tetrahymena thermophila SB210
          Length = 1328

 Score = 31.5 bits (68), Expect = 8.1
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = +2

Query: 74   KYELINKTDSKSENTKKSEQQATEKVKIDIKLLDLYENSEPDVYVRTSTEEE 229
            K  +IN T+   ++ KK++ Q  +++K + K+  LYE ++     + ST+++
Sbjct: 1216 KQNIINSTNESHQSPKKNKSQNIKELKQNKKMKSLYEQTQSKNISQISTKKK 1267


>UniRef50_A7PX92 Cluster: Chromosome chr12 scaffold_36, whole genome
           shotgun sequence; n=2; core eudicotyledons|Rep:
           Chromosome chr12 scaffold_36, whole genome shotgun
           sequence - Vitis vinifera (Grape)
          Length = 569

 Score = 31.5 bits (68), Expect = 8.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 331 RTRQLRYNSAIIAAMSQPGRTKKDCGFVYQQLFRR 435
           R+  LR ++AI+ +   PG  K+D GF  + LF R
Sbjct: 127 RSGVLRQSNAIVLSQPGPGSAKEDLGFFVRDLFTR 161


>UniRef50_Q8IKX0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 587

 Score = 31.5 bits (68), Expect = 8.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 110 ENTKKSEQQATEKVKIDIKLLDLYENSEPDVYV 208
           EN    E    EK+  DIK L +YE  + DVY+
Sbjct: 433 ENNHNFESVINEKLLTDIKNLSIYEKKKTDVYI 465


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 319,633,652
Number of Sequences: 1657284
Number of extensions: 5210017
Number of successful extensions: 16313
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16310
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)