Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30560X
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    27   0.96 
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    27   0.96 
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    27   1.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   6.7  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    24   8.9  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    24   8.9  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    24   8.9  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 95  TDSKSENTKKSEQQATEKVKIDIKLLDLYENSEPDVYVRTSTEEE 229
           + S SEN  + + +A EKV  D  + D+ E    D     +T ++
Sbjct: 248 SSSSSENLLQDKAEAEEKVSADASVQDIAEKESLDADKELATNDQ 292


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
            Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 271  GWQWILPQVAVMAVFFLGRCSYIDVWLRI 185
            GW+W +  VAVM  FF     Y+++W  I
Sbjct: 971  GWEWGVVAVAVMFYFF-----YVEIWKSI 994


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 161 IKLLDLYENSEPDVYVRTSTEEEHGHYSY 247
           ++++DLYE  EP +YVR+   +E   Y Y
Sbjct: 332 LRIVDLYE--EPVLYVRSPDSDEEKVYKY 358


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 179  YENSEPDVYVRTSTEEEHGHYSYLWQY 259
            YEN   DV+ R S +  +G Y  +  Y
Sbjct: 1274 YENGTEDVFARNSEQVYNGPYDKIRDY 1300


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 350 YLSCLVLDLHVIMTTLAITISNKSAPRMAMDIATSS 243
           Y+ CL+ DL  + + + I +S+  A      + TSS
Sbjct: 649 YMDCLLYDLRTLYSEIEIRVSDPVARFCETAVDTSS 684


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +1

Query: 373 MSQPGRTKKDC-GFVYQQLFRRP 438
           +SQPG T  DC GF    ++  P
Sbjct: 531 LSQPGTTNSDCSGFAENNIYVTP 553


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 95  TDSKSENTKKSEQQATEKVKIDIKLLDLYENSEPD 199
           ++ K+ +T+KSE +A+E   +D+ + D +E   P+
Sbjct: 28  SNEKNFSTEKSENEASESHVVDV-VKDPFEQYTPE 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,309,173
Number of Sequences: 5004
Number of extensions: 21576
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)