Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30560X
         (438 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.55 
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)     28   3.9  
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)                27   6.8  

>SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1082

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 89  NKTDSKSENTKKSEQQATEKVKIDIKLLDLYENSEPDV-YVRTSTEE-EHGHYSYL 250
           N ++SK E  K+  ++     K++ K L++Y+     +  V  S EE EHGH SY+
Sbjct: 209 NTSESKEERRKRHAKKLKAIAKLE-KKLEMYDEEIKRLDLVELSLEEMEHGHSSYI 263


>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
          Length = 832

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 354 QCHYCSDESTRPHQKGLRLCIP 419
           QC + +D S+ PH KGL+L  P
Sbjct: 271 QCKHHTDVSSMPHLKGLKLAHP 292


>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
          Length = 299

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 71  LKYELINKTDSKSENTKKS--EQQATEKVKIDIKLLDLYENSEPDV 202
           L  +L  K    SE  KK+  EQ   EK + + +LLD  +N  P+V
Sbjct: 182 LAAKLSKKWRKMSEERKKAYTEQYEEEKKEYETQLLDFLKNKYPNV 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,161,819
Number of Sequences: 59808
Number of extensions: 180941
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)