Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30560X
         (438 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    29   0.072
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    26   0.67 
DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.     25   1.6  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 29.1 bits (62), Expect = 0.072
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 74  KYELINKTDSKSENTKKSEQQATEKVKIDIKLLDLYENSEPDVYVRTSTEEE 229
           K +++   D KS    + +Q   EK K+D+ + DL +  + D   +   E+E
Sbjct: 278 KKDVVTAKDEKSVLATEHQQLLREKTKLDLTISDLSDEVQGDNKSKERAEQE 329


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.8 bits (54), Expect = 0.67
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 86  INKTDSKSENTKKSEQQATEKVKIDIKLLDLYENS 190
           INK     EN KK E +  E +K   KL+D  + S
Sbjct: 421 INKKAQIEENYKKIESEKNEALKRQEKLIDHIKTS 455


>DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 179 YENSEPDVYVRTSTEEEHG 235
           Y   EPD Y+  STE   G
Sbjct: 193 YPKYEPDAYITASTERSRG 211


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,254
Number of Sequences: 2352
Number of extensions: 5314
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36568146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)