Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30560X
         (438 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY142213-1|AAN52141.1|  555|Drosophila melanogaster transcriptio...    27   8.4  
AY122247-1|AAM52759.1|  896|Drosophila melanogaster SD04548p pro...    27   8.4  
AF444795-1|AAM11543.1|  424|Drosophila melanogaster Dorsocross3 ...    27   8.4  
AE014297-2941|AAF55858.2|  896|Drosophila melanogaster CG5798-PA...    27   8.4  
AE014297-706|AAZ52519.1|  555|Drosophila melanogaster CG9638-PB,...    27   8.4  

>AY142213-1|AAN52141.1|  555|Drosophila melanogaster transcriptional
           adapter 2S protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 290 SNKSAPRMAMDIATSSCNGRVLPRSMFV 207
           SN  APR  + IA  +C+G +LP   ++
Sbjct: 367 SNSIAPRNTLHIADPTCSGALLPSKNYL 394


>AY122247-1|AAM52759.1|  896|Drosophila melanogaster SD04548p
           protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 113 NTKKSEQQATEKVKIDIKLLDLYENSEPDVYVRTSTEEEHGHYSY-LWQYP 262
           NTK ++      +     LLD+ +N +PDV  R   +   G Y Y +  YP
Sbjct: 228 NTKDAQPATNTAIST---LLDILKNWDPDVTYRAPIQIVEGGYEYFIMMYP 275


>AF444795-1|AAM11543.1|  424|Drosophila melanogaster Dorsocross3
           protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 147 KLRLTSSS*TYTKILSQTSMYEHRPRKNTAITATCGNIHCHPRSAFV 287
           K++LT+++      +   SM++++PR +   T+  G I   P+ AFV
Sbjct: 162 KVKLTNNTLDNNGHIVLASMHKYQPRLHVIRTSDLGQIPWAPQQAFV 208


>AE014297-2941|AAF55858.2|  896|Drosophila melanogaster CG5798-PA
           protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 113 NTKKSEQQATEKVKIDIKLLDLYENSEPDVYVRTSTEEEHGHYSY-LWQYP 262
           NTK ++      +     LLD+ +N +PDV  R   +   G Y Y +  YP
Sbjct: 228 NTKDAQPATNTAIST---LLDILKNWDPDVTYRAPIQIVEGGYEYFIMMYP 275


>AE014297-706|AAZ52519.1|  555|Drosophila melanogaster CG9638-PB,
           isoform B protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 290 SNKSAPRMAMDIATSSCNGRVLPRSMFV 207
           SN  APR  + IA  +C+G +LP   ++
Sbjct: 367 SNSIAPRNTLHIADPTCSGALLPSKNYL 394


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,010
Number of Sequences: 53049
Number of extensions: 262236
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1396986582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)