Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30560X
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical p...    29   1.1  
Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z75714-12|CAB00066.1|  368|Caenorhabditis elegans Hypothetical p...    29   2.0  
AL033508-5|CAA22057.1|  368|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z81057-3|CAB02916.1|  168|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like ...    27   4.5  

>Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 186 ILSQTSMYEHRPRKNTAITATCGNIHCHPRS--AFVANRY 299
           ++  T M E RPR+NT +     +I C P +  +FV  RY
Sbjct: 300 LIGITDMAEKRPRRNTVMAVRFSHIVCIPENLLSFVKIRY 339


>Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 186 ILSQTSMYEHRPRKNTAITATCGNIHCHPRS--AFVANRY 299
           ++  T M E RPR+NT +     +I C P +  +FV  RY
Sbjct: 300 LIGITDMAEKRPRRNTVMAVRFSHIVCIPENLLSFVKIRY 339


>Z75714-12|CAB00066.1|  368|Caenorhabditis elegans Hypothetical
           protein Y106G6G.1 protein.
          Length = 368

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 186 ILSQTSMYEHRPRKNTAITATCGNIHCHPRSAFVANRY 299
           ++S+   YE  P+KN  I  T  NI  HP  + V + Y
Sbjct: 230 VVSEVVQYEKNPKKNDPI-VTMSNILIHPAQSSVQSFY 266


>AL033508-5|CAA22057.1|  368|Caenorhabditis elegans Hypothetical
           protein Y106G6G.1 protein.
          Length = 368

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 186 ILSQTSMYEHRPRKNTAITATCGNIHCHPRSAFVANRY 299
           ++S+   YE  P+KN  I  T  NI  HP  + V + Y
Sbjct: 230 VVSEVVQYEKNPKKNDPI-VTMSNILIHPAQSSVQSFY 266


>Z81057-3|CAB02916.1|  168|Caenorhabditis elegans Hypothetical
           protein F10D11.4 protein.
          Length = 168

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 74  KYELINKTDSKSENTKKSEQ--QATEKVKIDIKLLDLYENSEP 196
           K  LI     K E +KK E+  +  EKV+ ++K  D  +N+EP
Sbjct: 73  KKSLIKVLSKKKERSKKKEKDKKPDEKVEKEVKKEDKPDNNEP 115


>U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like
           protease protein 2 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 185 NSEPDVYVRTSTEEEHGHYSYLWQY 259
           N +PD +V+ S  +EH  Y + + Y
Sbjct: 148 NDDPDTFVKISYNDEHREYVHSYDY 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,401,244
Number of Sequences: 27780
Number of extensions: 126080
Number of successful extensions: 417
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)