Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30560X
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   4.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.9  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 80  ELINKTDSKSENTKKSEQQATEKVKIDIKLLDLYE 184
           E +N+ + +S+N+K+   +  E   +D    DL+E
Sbjct: 73  EKLNQLEIESDNSKEVNDKKEENFIVDRLRNDLFE 107


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 415 IQSRSPFWCGRV 380
           +Q+R P WC RV
Sbjct: 333 MQTRVPAWCDRV 344


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 330 KNQAAQIQQCHYCSDESTRPHQKG 401
           KNQ       HY S +  R H +G
Sbjct: 112 KNQYKNQNNNHYTSHQHLRTHLRG 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,565
Number of Sequences: 438
Number of extensions: 1358
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)