Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30560X
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66310.1 68418.m08360 kinesin motor family protein contains P...    29   1.0  
At5g06905.1 68418.m00780 cytochrome P450 family protein similar ...    28   2.4  
At3g49055.1 68416.m05359 hypothetical protein                          27   4.2  
At1g30470.1 68414.m03724 SIT4 phosphatase-associated family prot...    27   7.3  

>At5g66310.1 68418.m08360 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1063

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 77  YELINKTDSKSE-NTKKSEQQATEKVKIDIKLLDLYENSEPDVYVRTSTEE 226
           YE+   TD  SE N ++     TEK  I I  ++    S PD Y   + EE
Sbjct: 549 YEMAEHTDGNSEDNCREVRCIETEKSDISIGPVENMPESSPDKYEAVTAEE 599


>At5g06905.1 68418.m00780 cytochrome P450 family protein similar to
           SP|Q42798|C931_SOYBN Cytochrome P450 93A1 (EC 1.14.-.-)
           {Glycine max}; contains Pfam profile PF00067: Cytochrome
           P450
          Length = 521

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 80  ELINKTDSKSENTKKSEQQATEKVKIDIKLLDLYENSEPDV 202
           EL+ K   + EN K +E++  +K  +DI LLD Y + + ++
Sbjct: 245 ELVEKILKEYENDKSNEEEEKDKDIVDI-LLDTYNDPKAEL 284


>At3g49055.1 68416.m05359 hypothetical protein
          Length = 480

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 71  LKYELINKTDSKSENTKKSEQQATEKVKIDIKLLDLYENSEPDVYVRTSTEEEHGHYSYL 250
           LK EL        E  +KS + A  ++    +LL   E+    +    STE   G + Y+
Sbjct: 389 LKEELAKAAMVAEEAAEKSLRLAERRIA---QLLSRIEHLYRQLEEAESTERRRGKFRYV 445

Query: 251 WQYPL 265
           W +P+
Sbjct: 446 WCWPM 450


>At1g30470.1 68414.m03724 SIT4 phosphatase-associated family protein
           contains similarity to copper chaperone homolog CCH
           GB:AAF15286 GI:6525011 from [Glycine max]; contains Pfam
           profile PF04499: SIT4 phosphatase-associated protein
          Length = 811

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -2

Query: 329 DLHVIMTTLAITISNKSAPRMAMDIATSSCNGRVLPRSM 213
           ++H     +  T++  + P +A  +++ SC GR+L  ++
Sbjct: 208 EVHANAAEILCTVARYAPPGLATKLSSPSCTGRLLKHTL 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,926,794
Number of Sequences: 28952
Number of extensions: 115236
Number of successful extensions: 299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)