Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30559X
(382 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 82 2e-17
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 71 5e-14
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 50 9e-08
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 49 3e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 42 2e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 41 6e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 41 8e-05
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 39 2e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 37 0.001
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 36 0.002
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 34 0.007
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 34 0.009
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 33 0.015
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 32 0.026
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 32 0.035
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 31 0.081
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 31 0.081
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 30 0.14
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 29 0.33
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 28 0.43
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 0.57
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 28 0.57
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 27 0.75
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 1.3
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 26 2.3
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 2.3
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 25 3.0
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 4.0
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 4.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 4.0
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 5.3
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 25 5.3
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 5.3
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 24 7.0
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 24 7.0
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 24 7.0
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 82.2 bits (194), Expect = 2e-17
Identities = 34/50 (68%), Positives = 45/50 (90%)
Frame = +1
Query: 106 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 255
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP +
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPIL 54
Score = 75.4 bits (177), Expect = 3e-15
Identities = 34/40 (85%), Positives = 40/40 (100%)
Frame = +3
Query: 261 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPT
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPT 96
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 71.3 bits (167), Expect = 5e-14
Identities = 34/42 (80%), Positives = 38/42 (90%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
+GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PT
Sbjct: 57 KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPT 98
Score = 58.8 bits (136), Expect = 3e-10
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +1
Query: 106 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 258
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ K
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICK 57
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 50.4 bits (115), Expect = 9e-08
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
GRD++A+A++GTGKTA F I L+++DT + Q LIL PT
Sbjct: 81 GRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPT 121
Score = 42.3 bits (95), Expect = 2e-05
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 58 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 225
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 226 IQQRAI 243
IQ+ +I
Sbjct: 70 IQEESI 75
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 48.8 bits (111), Expect = 3e-07
Identities = 20/40 (50%), Positives = 33/40 (82%)
Frame = +3
Query: 261 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPS 193
Score = 43.6 bits (98), Expect = 1e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +1
Query: 145 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 42.3 bits (95), Expect = 2e-05
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
G DV+ QA+SG GKTA F +S LQQI+ E L+L T
Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHT 128
Score = 32.7 bits (71), Expect = 0.020
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
F D LK ELLR I GFE PS +QQ I
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCI 82
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 41.1 bits (92), Expect = 6e-05
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 6/48 (12%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPT 380
+G+D++AQA++G+GKTA + I IL+ QID + R AL+L PT
Sbjct: 50 EGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPT 97
Score = 32.7 bits (71), Expect = 0.020
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 148 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
+TF D NL L R I+ FEKP+++Q I
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 40.7 bits (91), Expect = 8e-05
Identities = 18/40 (45%), Positives = 29/40 (72%)
Frame = +3
Query: 261 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPT
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPT 123
Score = 31.5 bits (68), Expect = 0.046
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +1
Query: 10 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 189
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 190 GIYAYGFEKPSAIQQRAI 243
GF+ P+ IQQ AI
Sbjct: 60 ACEKLGFKTPTPIQQEAI 77
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 39.1 bits (87), Expect = 2e-04
Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Frame = +3
Query: 249 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAP 377
L +GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P
Sbjct: 103 LLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSP 147
Score = 31.5 bits (68), Expect = 0.046
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
F M L + LLR I+ GF+ P+ IQ++ I
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 36.7 bits (81), Expect = 0.001
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPT 380
G D+I +A +G+GKT F I IL+ + + QAL++APT
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPT 201
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 35.9 bits (79), Expect = 0.002
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
+GR+ I A++G+GKTA F++ I+++ ALIL PT
Sbjct: 43 EGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPT 84
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 34.3 bits (75), Expect = 0.007
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPT 380
G+D++ A +G+GKTA F + IL+++ + + LIL PT
Sbjct: 296 GKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPT 339
Score = 31.9 bits (69), Expect = 0.035
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 151 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
+F MNL +L+G+ GFE P+ IQ + I
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 33.9 bits (74), Expect = 0.009
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPT 380
+GRD++ A++G+GKT F + +++ + TS+ AL+++PT
Sbjct: 75 KGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPT 120
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 33.1 bits (72), Expect = 0.015
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 145 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 255
+E F D+ L E + + I GFE + IQ+R+I P +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLL 124
Score = 29.1 bits (62), Expect = 0.25
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQI 335
GRDV+ A++G+GKT F I ++ +
Sbjct: 126 GRDVLGAAKTGSGKTLAFLIPTIEML 151
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 32.3 bits (70), Expect = 0.026
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQID 338
GRDV+ A++G+GKT F I LQ ++
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLN 228
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 31.9 bits (69), Expect = 0.035
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +3
Query: 261 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPT 380
RD++A A +G+GKT + ILQ++ + +A+I+APT
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPT 124
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 30.7 bits (66), Expect = 0.081
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 246 ALHQGRDVIAQAQSGTGKTATFSISILQQI 335
A+ GRDVI A++G+GKT F + + + I
Sbjct: 451 AITSGRDVIGVAKTGSGKTIAFLLPMFRHI 480
Score = 26.2 bits (55), Expect = 1.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 130 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
D + V ++ L + + I + G+EKP++IQ +AI
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI 449
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 30.7 bits (66), Expect = 0.081
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISIL 326
GRD++A AQ+G+GKTA F IL
Sbjct: 206 GRDLMACAQTGSGKTAGFLFPIL 228
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.9 bits (64), Expect = 0.14
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 121 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKD 261
LDT+W V + NL+ + + I + F PS I + MP + D
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLND 230
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 28.7 bits (61), Expect = 0.33
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Frame = +3
Query: 222 CNPATRNNALHQGRDVIAQAQSGTGKTATFSISILQQ-------IDTSIRECQALILAPT 380
C PA N +D +AQ+G+GKT + + I+Q+ + T A+I+APT
Sbjct: 169 CLPALLNT---DDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 28.3 bits (60), Expect = 0.43
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 145 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 240
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
Score = 23.8 bits (49), Expect = 9.3
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQID 338
GRD++ + +G+GKT ++ + + I+
Sbjct: 159 GRDMVGISATGSGKTLSYCLPAIVHIN 185
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 0.57
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 118 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 210
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.9 bits (59), Expect = 0.57
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 249 LHQGRDVIAQAQSGTGKTATFSISIL 326
L Q +D+I A++G+GKTA F I ++
Sbjct: 283 LLQRKDLIGIAETGSGKTAAFIIPLI 308
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 27.5 bits (58), Expect = 0.75
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 213 KTFCNPATRNNALHQGRDVIAQAQSGTGKTATFSISILQQI 335
KT+ + A N L G VI + +GK+ + I ILQ +
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL 351
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 1.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 95 DLREWTLGHLTPT 133
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 245 CLASRTRCYRSSPVRNWKNCYFLYIDSTTNRYK 343
C R CYR+S + +K + + S N Y+
Sbjct: 5 CTLRRLECYRASRLMPYKPSFLFSLISNVNEYE 37
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 2.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 115 QGPFPEVHRNYLDPSMAHFWNPLANL 38
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 3.0
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +1
Query: 139 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSLKPSQELEKLLLSLY 318
++V F+DM++ GI KP + + +++ C+K+ + + P ++ LL L
Sbjct: 190 EIVRLFNDMDVYMLDTPGIMTPSITKPEDMLKLSLVGCVKEGI--VHPVTVVDYLLFHLN 247
Query: 319 R 321
R
Sbjct: 248 R 248
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 4.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 241 IMPCIKDAMLSLKPSQELEKLLLSLYRF 324
I+ CI + S +P + + L++L+RF
Sbjct: 824 ILTCISIPLFSFEPLSKKNRFLINLFRF 851
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.0 bits (52), Expect = 4.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +3
Query: 288 GTGKTATFSISILQQI----DTSIRECQALILAP 377
G G T F+ SILQQI + SI +C + +P
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSP 122
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 4.0
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 124 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLS 273
DTDWD +V + D++L+ RGI A G + + + P + ++
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMN 663
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 24.6 bits (51), Expect = 5.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 273 R*HRVLDARHYCALLDCRRFF 211
R HR+ D R YC DC + F
Sbjct: 17 RAHRLGDPRFYCTYPDCPKSF 37
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 24.6 bits (51), Expect = 5.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 240 NNALHQGRDVIAQA--QSGTGKTATFSISILQQIDTSIRECQAL 365
NN + R ++A+A +SGT + T SIS+ + +D R Q L
Sbjct: 625 NNENERARKLLARARIESGTERIWTKSISLERILDEKDRALQLL 668
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 24.6 bits (51), Expect = 5.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 184 LRGIYAYGFEKPSAIQQRAIMPCIKDAMLSLKP 282
L G A K A A++PCIK+ M KP
Sbjct: 161 LLGSLASSSPKAVADYMAALIPCIKERMHDTKP 193
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.2 bits (50), Expect = 7.0
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +3
Query: 240 NNALHQGRDVIAQAQSGTGKTATFSISILQQI 335
N + + QA++GTGKT F + + +
Sbjct: 70 NEVFPNEENAVVQAKTGTGKTLAFLLVAFKDV 101
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 7.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 91 RNYLDPSMAHFWNPLANLLTFFQTN 17
+NY++ S+ + PL NLL + N
Sbjct: 395 KNYMEESLQKTYKPLPNLLQYLILN 419
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 24.2 bits (50), Expect = 7.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 111 VHSRRSIVTTLILRWPIFGILWPI 40
+H +R + L++++PIF I W I
Sbjct: 176 LHLQRILAILLLIQFPIFLIWWKI 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,502
Number of Sequences: 5004
Number of extensions: 34340
Number of successful extensions: 143
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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