Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30559X
(382 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 1e-17
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 1e-13
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 49 1e-06
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 49 1e-06
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 44 3e-05
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 41 3e-04
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 5e-04
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 40 0.001
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 39 0.002
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 39 0.002
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 38 0.003
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 35 0.019
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 34 0.034
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.045
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.045
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 33 0.10
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.14
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 30 0.55
SB_17830| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.73
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.97
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.97
SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42) 29 1.3
SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40) 29 1.3
SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0) 29 1.3
SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0) 29 1.3
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 29 1.7
SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 28 2.9
SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07) 27 3.9
SB_48723| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09) 27 5.2
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2) 27 5.2
SB_23509| Best HMM Match : XET_C (HMM E-Value=3.6) 27 5.2
SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_43286| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 27 5.2
SB_2750| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09) 27 5.2
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 27 6.8
SB_59402| Best HMM Match : DUF1690 (HMM E-Value=3.4) 26 9.0
SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7) 26 9.0
SB_39625| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_33829| Best HMM Match : Pkinase (HMM E-Value=0) 26 9.0
SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 26 9.0
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 85.4 bits (202), Expect = 1e-17
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = +1
Query: 115 GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKD 261
G ++WD+VVE+FDDMNLKE LLRGIYAYGFEKPSAIQQRAI PC ++
Sbjct: 52 GKRQSNWDEVVESFDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQE 100
Score = 68.5 bits (160), Expect = 2e-12
Identities = 35/55 (63%), Positives = 44/55 (80%), Gaps = 6/55 (10%)
Frame = +3
Query: 234 TRNNALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE------CQALILAPT 380
T+N+ + RDVIAQAQSGTGKTATF+ISILQ+IDT+ ++ CQAL+LAPT
Sbjct: 114 TKNHYVLSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPT 168
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 72.5 bits (170), Expect = 1e-13
Identities = 34/42 (80%), Positives = 39/42 (92%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
+GRDVIAQAQSGTGKTATFSIS+LQ IDT +RE QAL+L+PT
Sbjct: 33 KGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLSPT 74
Score = 34.7 bits (76), Expect = 0.026
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 205 GFEKPSAIQQRAIMPCIK 258
GFEKPSAIQQRAI P +K
Sbjct: 16 GFEKPSAIQQRAIKPILK 33
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 48.8 bits (111), Expect = 1e-06
Identities = 20/41 (48%), Positives = 32/41 (78%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
GRD++A+A++GTGKTA + + +L++ DT+ QAL+L PT
Sbjct: 84 GRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPT 124
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
F+D LK ELL GI+ GF+KPS IQ+ +I
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESI 78
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 48.8 bits (111), Expect = 1e-06
Identities = 20/41 (48%), Positives = 32/41 (78%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
GRD++A+A++GTGKTA + + +L++ DT+ QAL+L PT
Sbjct: 84 GRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPT 124
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
F+D LK ELL GI+ GF+KPS IQ+ +I
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESI 78
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 44.4 bits (100), Expect = 3e-05
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
G D+IAQA+SGTGKT FS+ L+ + T Q +IL PT
Sbjct: 50 GLDLIAQAKSGTGKTCVFSVIALENVITESNCIQIIILTPT 90
Score = 32.7 bits (71), Expect = 0.10
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
F + L LLRG+ GFEKPS IQ +AI
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAI 44
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 41.1 bits (92), Expect = 3e-04
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +3
Query: 264 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
++IAQ+QSGTGKTA F +++L ++D + Q + L+PT
Sbjct: 144 NMIAQSQSGTGKTAAFVLTMLSRVDATKPYPQVICLSPT 182
Score = 36.7 bits (81), Expect = 0.006
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +1
Query: 148 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 276
++F+++ L L RG+Y GF KPS IQ+ A+ + D +++
Sbjct: 103 KSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNM 145
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 40.3 bits (90), Expect = 5e-04
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPT 380
G+DV+A A++G+GKTA F I + +++ T + +ALIL+PT
Sbjct: 318 GKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKVGIRALILSPT 360
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
QGRD I A++G+GKTA F++ ILQ++ A++L PT
Sbjct: 43 QGRDCIGCAKTGSGKTAAFALPILQKLCDDPYGIFAVVLTPT 84
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 6/56 (10%)
Frame = +3
Query: 231 ATRNNALHQGRDVIAQAQSGTGKTATFSISILQQI-DTSI-----RECQALILAPT 380
A+ N ++ G DVI QA++GTGKT +F++ +++++ D + R + L++APT
Sbjct: 101 ASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPT 156
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
G D+I QA+SG GKTA F ++ LQQ++ + L++ T
Sbjct: 84 GMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHT 124
Score = 33.1 bits (72), Expect = 0.078
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 276
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHE----CIPQAILGM 85
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
G D+I QA+SG GKTA F ++ LQQ++ + L++ T
Sbjct: 84 GMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHT 124
Score = 33.1 bits (72), Expect = 0.078
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 276
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHE----CIPQAILGM 85
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +3
Query: 261 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
+DVI A++G+GKT F++ ILQ + + + ALIL PT
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNPQRLFALILTPT 41
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 35.1 bits (77), Expect = 0.019
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPT 380
G+DV A A +GTGKTA F + IL+++ T + L++ PT
Sbjct: 47 GKDVCACAATGTGKTAAFMLPILERLLYRPTQSPAIRVLVITPT 90
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 34.3 bits (75), Expect = 0.034
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQ----QIDTSIRECQALILAPT 380
GRDV+ A++G+GKT F I I++ Q TS+ AL+++PT
Sbjct: 87 GRDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSMDGLGALVISPT 131
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 33.9 bits (74), Expect = 0.045
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQALILAPT 380
GRD++A AQ+G+GKTA + + +L Q ++ R AL +APT
Sbjct: 516 GRDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPT 561
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 33.9 bits (74), Expect = 0.045
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 246 ALHQGRDVIAQAQSGTGKTATFSISILQQID 338
AL RD+I A++G+GKT F I I+Q I+
Sbjct: 164 ALLYHRDIIGAAETGSGKTLAFGIPIIQHIE 194
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 255
++ + + ++LR + GF KP+ IQ +I P +
Sbjct: 132 WEGLGVAPDILRALGDQGFSKPTPIQSLSIPPAL 165
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 32.7 bits (71), Expect = 0.10
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISIL 326
Q RD+I A++G+GKTA F+I +L
Sbjct: 137 QNRDIIGVAETGSGKTAAFAIPLL 160
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 32.7 bits (71), Expect = 0.10
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +3
Query: 261 RDVIAQAQSGTGKTATFSISILQQI 335
RD++A AQ+G+GKTA F I IL +I
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRI 937
Score = 30.3 bits (65), Expect = 0.55
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 258
F+D++L E LL + G++KP+ +Q+ AI P +K
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAI-PIVK 910
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 32.7 bits (71), Expect = 0.10
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +1
Query: 25 ERRSEDWPEDSKNGPSKDQGSYD---GPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGI 195
E+ +E+ E +K + D+G GPPG GT D VVE DD K E G
Sbjct: 19 EKTAEEMRELAKKAEACDRGVRAILLGPPGSGKGTQLVSDDLVVELIDDNLTKPECQNGW 78
Query: 196 YAYGFEKPSA 225
GF + A
Sbjct: 79 LLDGFPRTVA 88
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 32.3 bits (70), Expect = 0.14
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISIL 326
GRDV+A AQ+G+GKTA F + ++
Sbjct: 748 GRDVMACAQTGSGKTAAFLLPVM 770
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 30.3 bits (65), Expect = 0.55
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPT 380
GRD+I A++G+GKT +S+ + + T ALIL PT
Sbjct: 109 GRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPT 154
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 130 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
D + +E+F D+NL EL + F+ P+ IQ +++
Sbjct: 66 DCPKPIESFHDLNLPPELSTYLAKKNFQVPTPIQMQSL 103
>SB_17830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 29.9 bits (64), Expect = 0.73
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 291 FLTGLER*HRVLDARHYCALLDCRRFFKTIGVYASQQFFFEVH 163
FLT R +++ + RH C D F K Y +FFF+VH
Sbjct: 80 FLTFATRLYKLSEPRHIC--WDETHFGKHANFYIKGEFFFDVH 120
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 29.5 bits (63), Expect = 0.97
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATF----SISILQQIDTSIRECQ-ALILAPT 380
GRD+I A++G+GKTA F + I+ Q + + + LI APT
Sbjct: 554 GRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPT 599
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.5 bits (63), Expect = 0.97
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 64 GPSKDQG-SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRG 192
GP +QG S GPPG PG T W+ + N E LRG
Sbjct: 3363 GPKGEQGRSISGPPG-PPGAPGTSWNDSIVNGGLSNSLLESLRG 3405
>SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)
Length = 618
Score = 29.1 bits (62), Expect = 1.3
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +1
Query: 7 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 186
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 265 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 323
Query: 187 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELEKLLLSLYRFYNK 333
++A +GF K + + + ++ ++D + +++ L+L + ++K
Sbjct: 324 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 375
>SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40)
Length = 325
Score = 29.1 bits (62), Expect = 1.3
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +1
Query: 7 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 186
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 187 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELEKLLLSLYRFYNK 333
++A +GF K + + + ++ ++D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 393
Score = 29.1 bits (62), Expect = 1.3
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +1
Query: 7 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 186
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 187 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELEKLLLSLYRFYNK 333
++A +GF K + + + ++ ++D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 423
Score = 29.1 bits (62), Expect = 1.3
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +1
Query: 7 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 186
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 187 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELEKLLLSLYRFYNK 333
++A +GF K + + + ++ ++D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +3
Query: 249 LHQGRDVIAQAQSGTGKTATFSISILQ 329
L +GRD++ A++G+GKT F + +++
Sbjct: 606 LLKGRDLLGAAKTGSGKTLAFLVPVVE 632
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 7 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGP 99
+M Y SER P D P+ D GS D P
Sbjct: 1171 SMEYDSERHPYQAPADEMVNPNTDGGSRDNP 1201
>SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 49 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 180
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 71 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 111
>SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 49 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 180
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 54 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 94
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 201 GVYASQQFFFEVHVIEGFDNLIPVGVKC 118
GVY F H + GF N IP +C
Sbjct: 742 GVYLESNVFQNGHALVGFQNTIPASQEC 769
>SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)
Length = 532
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRE 353
G DV+A + SGT K + F ++++ D+ R+
Sbjct: 247 GSDVVANSSSGTVKRSLFLPEVMEENDSVFRD 278
>SB_48723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 254 SRTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 346
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 155 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 183
>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
Length = 969
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 254 SRTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 346
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 233 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 261
>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
Length = 671
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 254 SRTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 346
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 124 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 152
>SB_23509| Best HMM Match : XET_C (HMM E-Value=3.6)
Length = 362
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 254 SRTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 346
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 196 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 224
>SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Frame = +1
Query: 61 NGPSKDQGSYDGPPGMDPGTLD-------TDWDQVVE 150
NGP+ D YD PP P T D T+WD ++
Sbjct: 340 NGPTSDNTDYDSPPRATP-TYDAPTRSTRTNWDPTID 375
>SB_43286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 254 SRTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 346
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 233 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 261
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 246 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTS 344
+L +GRDV A G+GK + + I+ QI S
Sbjct: 220 SLLRGRDVAGVAIEGSGKRLAYLLPIIHQITES 252
>SB_2750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 254 SRTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 346
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 233 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 261
>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
Length = 944
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 254 SRTRCYRSSPVRNWKNCYFLYIDSTTNRYKH 346
S+T+ Y S + NW +C+ +++ T +Y H
Sbjct: 233 SKTKKYLS--IENWISCFHIFVGVYTQKYCH 261
>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4085
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 49 EDSKNGPSKDQGSYDGPPGMDP 114
+DSK P D+ PPG DP
Sbjct: 4012 KDSKTNPKSDKTQIGQPPGADP 4033
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKT 302
GRDV+A AQ+G+GKT
Sbjct: 171 GRDVMACAQTGSGKT 185
>SB_59402| Best HMM Match : DUF1690 (HMM E-Value=3.4)
Length = 339
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 26 KEGQKIGQRIPKMGHRRIKVVTMDLREWTLGHLTPTGIKLSKP 154
KE + ++ K H+R K + RE + P I++SKP
Sbjct: 19 KEATRKETKVKKPKHKRRKTLDSSEREEKMADKVPRPIEISKP 61
>SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7)
Length = 280
Score = 26.2 bits (55), Expect = 9.0
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Frame = +1
Query: 7 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 186
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 175 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 233
Query: 187 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELEKLLL 309
++A +GF K + + + ++ ++D + +++ L+L
Sbjct: 234 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLIL 277
>SB_39625| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 902
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 37 EDWPEDSKNGPSKDQGSYDGP 99
+DWPE S PSK+ S + P
Sbjct: 483 DDWPEQSVLEPSKESNSEEKP 503
>SB_33829| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 290
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 115 GTLDTDWDQVVETFDDMNLK 174
GTL W V TFDD NLK
Sbjct: 174 GTLADIWSLGVPTFDDTNLK 193
>SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 255
++ + + ++LR + GF KP+ IQ +I P +
Sbjct: 74 WEGLGVAPDILRALGDQGFSKPTPIQSLSIPPAL 107
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 26.2 bits (55), Expect = 9.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Frame = -2
Query: 246 HYCALLDCRRFFKTIGVYASQQFFFEVHVIEGFDNL---IPVGVKC-----PRVHSRRSI 91
HYC L+D +R+F + S+ F F+ + I V VKC P+ ++RS
Sbjct: 1876 HYCTLIDGQRYFYIKKLSRSEAGIFVAASELDFETMKQPITVTVKCTDDGNPQYSNQRSF 1935
Query: 90 VTTL 79
TL
Sbjct: 1936 NVTL 1939
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,568,113
Number of Sequences: 59808
Number of extensions: 265360
Number of successful extensions: 821
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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