Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30559X
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       33   9e-04
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   0.92 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   6.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   6.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 33.5 bits (73), Expect = 9e-04
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = +3

Query: 258 GRDVIAQAQSGTGKTATFSISILQQI 335
           GRD++A AQ+G+GKTA F++ I+  +
Sbjct: 233 GRDLMACAQTGSGKTAAFAVPIINTL 258



 Score = 27.9 bits (59), Expect = 0.043
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 139 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHAL 227


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 0.92
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 283 SQELEKLLLSLYRFYNKSIQAFVNV 357
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +3

Query: 168 PQRRIVERHIRLWF*KTFC----NPATRNNAL 251
           P +++    I  WF  TFC    N AT  NA+
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAV 552


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 267 HRVLDARHYCALLDCRRFFKTIGVYASQ 184
           H +  ++H C++   R   K  GVY+ +
Sbjct: 101 HPLSGSKHLCSICGDRASGKHYGVYSCE 128


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 267 HRVLDARHYCALLDCRRFFKTIGVYASQ 184
           H +  ++H C++   R   K  GVY+ +
Sbjct: 101 HPLSGSKHLCSICGDRASGKHYGVYSCE 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,540
Number of Sequences: 438
Number of extensions: 2430
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)