Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30559X
(382 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 68 2e-12
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 67 4e-12
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 67 4e-12
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 64 2e-11
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 56 1e-08
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 50 7e-07
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 50 7e-07
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 47 4e-06
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 47 4e-06
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 46 9e-06
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 46 9e-06
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 45 2e-05
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 44 3e-05
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 44 5e-05
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 39 0.001
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 39 0.001
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 39 0.001
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 39 0.001
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 38 0.002
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 36 0.009
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 36 0.009
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 35 0.016
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 33 0.049
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 33 0.064
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 33 0.064
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 33 0.085
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 33 0.085
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 33 0.085
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 32 0.15
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 31 0.26
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 31 0.26
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 31 0.34
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 30 0.45
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 30 0.45
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 30 0.45
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 30 0.45
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 30 0.45
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 29 0.79
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 29 0.79
At3g10020.1 68416.m01202 expressed protein 29 0.79
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 29 0.79
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 29 0.79
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 29 0.79
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 1.0
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 29 1.4
At1g17270.1 68414.m02103 expressed protein 28 1.8
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 28 2.4
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 28 2.4
At1g76010.1 68414.m08825 expressed protein 28 2.4
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 28 2.4
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 28 2.4
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 27 3.2
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 27 3.2
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 27 3.2
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 27 3.2
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 27 4.2
At4g30790.1 68417.m04362 expressed protein 27 5.6
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 27 5.6
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 27 5.6
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 27 5.6
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 27 5.6
At5g60600.2 68418.m07603 1-hydroxy-2-methyl-2-(E)-butenyl 4-diph... 26 9.7
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 26 9.7
At1g14420.1 68414.m01710 pectate lyase family protein similar to... 26 9.7
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 67.7 bits (158), Expect = 2e-12
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +1
Query: 127 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 258
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
+G DVI QAQSGTGKTATF +LQQ+D ++ +CQAL+LAPT
Sbjct: 75 KGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPT 116
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 66.9 bits (156), Expect = 4e-12
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +1
Query: 127 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 258
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
Score = 63.7 bits (148), Expect = 4e-11
Identities = 29/42 (69%), Positives = 35/42 (83%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
+G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPT
Sbjct: 75 KGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPT 116
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 66.9 bits (156), Expect = 4e-12
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = +1
Query: 118 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 258
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCK 77
Score = 64.1 bits (149), Expect = 3e-11
Identities = 29/42 (69%), Positives = 35/42 (83%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
+G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPT
Sbjct: 77 KGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPT 118
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 64.5 bits (150), Expect = 2e-11
Identities = 26/44 (59%), Positives = 37/44 (84%)
Frame = +1
Query: 127 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 258
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP ++
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQ 71
Score = 64.5 bits (150), Expect = 2e-11
Identities = 30/42 (71%), Positives = 36/42 (85%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
QGRDVIAQAQSGTGKT+ ++S+ Q +DTS RE QALIL+PT
Sbjct: 71 QGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPT 112
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 55.6 bits (128), Expect = 1e-08
Identities = 20/38 (52%), Positives = 33/38 (86%)
Frame = +1
Query: 145 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 258
+++FDDM + +++LRG+Y YG++KPS IQQRA++P +K
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK 58
Score = 53.6 bits (123), Expect = 4e-08
Identities = 24/42 (57%), Positives = 34/42 (80%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
+GRDVIAQAQSGTGKT+ +IS+ Q ++ S R+ Q L+L+P+
Sbjct: 58 KGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPS 99
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.6 bits (113), Expect = 7e-07
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
GRD++A+A++GTGKTA F I +L++ID QA+I+ PT
Sbjct: 168 GRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPT 208
Score = 40.3 bits (90), Expect = 4e-04
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.6 bits (113), Expect = 7e-07
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
GRD++A+A++GTGKTA F I +L++ID QA+I+ PT
Sbjct: 168 GRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPT 208
Score = 40.3 bits (90), Expect = 4e-04
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 47.2 bits (107), Expect = 4e-06
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
G D++A+A++GTGKT F I +L++ID + QA+IL PT
Sbjct: 161 GSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPT 201
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 47.2 bits (107), Expect = 4e-06
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
G D++A+A++GTGKT F I +L++ID + QA+IL PT
Sbjct: 161 GSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPT 201
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 46.0 bits (104), Expect = 9e-06
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
G DVI QA+SG GKTA F +S LQQI+ S + AL+L T
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHT 123
Score = 33.1 bits (72), Expect = 0.064
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 276
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHE----CIPQAILGM 84
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 46.0 bits (104), Expect = 9e-06
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
G DVI QA+SG GKTA F +S LQQI+ S + AL+L T
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHT 123
Score = 33.1 bits (72), Expect = 0.064
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 276
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHE----CIPQAILGM 84
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 44.8 bits (101), Expect = 2e-05
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
G D++A+A++GTGKT F I L++ID QA+IL PT
Sbjct: 191 GSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPT 231
Score = 42.7 bits (96), Expect = 8e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
F+D LK +LLRGIY GFEKPS IQ+ +I
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESI 185
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +3
Query: 264 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
DVI QA+SG GKTA F +S LQQI+ S + AL+L T
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHT 40
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 43.6 bits (98), Expect = 5e-05
Identities = 18/40 (45%), Positives = 29/40 (72%)
Frame = +3
Query: 261 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
+ +IAQA +G+GKT F + +L ++D ++RE QAL + PT
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPT 171
Score = 33.9 bits (74), Expect = 0.037
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 154 FDDMNLKEELLRGIYA-YGFEKPSAIQ 231
F+D+NL EL++G+Y FEKPS IQ
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 249 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
L GRD I AQ+G+GKT T+ + I I+ QA+I+ PT
Sbjct: 110 LFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPT 153
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 380
GRDV+ AQ+G+GKTA F++ IL ++ AL++ PT
Sbjct: 95 GRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPT 135
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 240 NNALHQGRDVIAQAQSGTGKTATFSISILQQI 335
N A +QG+DVI A++G+GKT F + ILQ++
Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRL 253
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPT 380
G DV+A A++G+GKTA F I +L+++ + + +ALIL+PT
Sbjct: 65 GVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPT 107
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 38.3 bits (85), Expect = 0.002
Identities = 15/27 (55%), Positives = 23/27 (85%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQI 335
QGRD+IA+A++GTGKT F I I++++
Sbjct: 138 QGRDIIARAKTGTGKTLAFGIPIIKRL 164
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 35.9 bits (79), Expect = 0.009
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQI 335
+G+DVI AQ+G+GKT F+I ILQ +
Sbjct: 45 EGKDVIGLAQTGSGKTGAFAIPILQAL 71
Score = 33.1 bits (72), Expect = 0.064
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 136 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
++VV+TF ++ ++EEL++ G++ PS IQ A+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEAL 40
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 35.9 bits (79), Expect = 0.009
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPT 380
+GRD+I +A++GTGKT F I I+ +I + Q L+LAPT
Sbjct: 152 EGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPT 199
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 35.1 bits (77), Expect = 0.016
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQI 335
+GRD+I +A++GTGKT F I I+ +I
Sbjct: 140 EGRDMIGRARTGTGKTLAFGIPIIDKI 166
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 33.5 bits (73), Expect = 0.049
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQI 335
QG+DV+A+A++GTGKT F + ++ +
Sbjct: 418 QGKDVLAKAKTGTGKTVAFLLPAIEAV 444
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 33.1 bits (72), Expect = 0.064
Identities = 11/27 (40%), Positives = 23/27 (85%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQI 335
+G+DV+A+A++G+GKT + + +LQ++
Sbjct: 82 EGKDVVARAKTGSGKTLAYLLPLLQKL 108
Score = 32.7 bits (71), Expect = 0.085
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 136 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
++ ++F+++ L L+R + G EKP+ IQQ AI
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAI 77
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 33.1 bits (72), Expect = 0.064
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 249 LHQGRDVIAQAQSGTGKTATFSISILQQI 335
L +GRD++A AQ+G+GKTA F I+ I
Sbjct: 193 LLEGRDLMACAQTGSGKTAAFCFPIISGI 221
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 32.7 bits (71), Expect = 0.085
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQI 335
QG+D++A+A++GTGKT F + ++ +
Sbjct: 116 QGKDILAKAKTGTGKTVAFLLPSIEAV 142
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 32.7 bits (71), Expect = 0.085
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPT 380
GRD+ A A +G+GKTA F++ L+++ + + LIL PT
Sbjct: 204 GRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPT 247
Score = 30.3 bits (65), Expect = 0.45
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 148 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
+TF ++NL LLR G++KP+ IQ I
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACI 198
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 32.7 bits (71), Expect = 0.085
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 228 PATRNNA--LHQGRDVIAQAQSGTGKTATFSISILQQI 335
P RN L GRD++A AQ+G+GKTA F I+ I
Sbjct: 171 PVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGI 208
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 31.9 bits (69), Expect = 0.15
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQI 335
GRD++ A++G+GKT F I IL+++
Sbjct: 108 GRDILGAARTGSGKTLAFVIPILEKL 133
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 31.1 bits (67), Expect = 0.26
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQI 335
+G+DV+A+A++GTGKT F + ++ +
Sbjct: 90 KGKDVLAKAKTGTGKTVAFLLPSIEVV 116
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 31.1 bits (67), Expect = 0.26
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 130 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
D + V+TF+D +++ I +EKP+AIQ +A+
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259
Score = 30.3 bits (65), Expect = 0.45
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQI 335
GRDVI A++G+GKTA F + ++ I
Sbjct: 265 GRDVIGIAKTGSGKTAAFVLPMIVHI 290
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 30.7 bits (66), Expect = 0.34
Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +3
Query: 261 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPT 380
RD+ + +G+GKT ++++ I+Q + +R +AL++ PT
Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPT 103
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 30.3 bits (65), Expect = 0.45
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPT 380
+GRD+I A++G+GKT + + L + R Q LILAPT
Sbjct: 201 KGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPT 247
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 30.3 bits (65), Expect = 0.45
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPT 380
+GRD+I A++G+GKT + + L + R Q LILAPT
Sbjct: 201 KGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPT 247
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 30.3 bits (65), Expect = 0.45
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPT 380
G+ ++A A +G+GKTA+F + I+ + T R A++LAPT
Sbjct: 147 GKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPT 195
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 30.3 bits (65), Expect = 0.45
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPT 380
G+ ++A A +G+GKTA+F + I+ + T R A++LAPT
Sbjct: 10 GKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPT 58
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 30.3 bits (65), Expect = 0.45
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQI 335
Q RDVI A++G+GKTA F + +L I
Sbjct: 349 QQRDVIGIAETGSGKTAAFVLPMLAYI 375
Score = 29.5 bits (63), Expect = 0.79
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 145 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 243
+ ++++ L ELL+ + G++KPS IQ AI
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAI 344
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 29.5 bits (63), Expect = 0.79
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 261 RDVIAQAQSGTGKTATFSISILQQI 335
RD++A AQ+G+GKTA F I+ I
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGI 213
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 29.5 bits (63), Expect = 0.79
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 261 RDVIAQAQSGTGKTATFSISILQQI 335
RD++A AQ+G+GKTA F I+ I
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGI 213
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 29.5 bits (63), Expect = 0.79
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 64 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 237
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 238 AIMP 249
+ P
Sbjct: 141 EVDP 144
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 29.5 bits (63), Expect = 0.79
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPT 380
QGRD++A A++G+GKT + I LQ+I R L+L+PT
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPT 239
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 29.5 bits (63), Expect = 0.79
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPT 380
QGRD++A A++G+GKT + I LQ+I R L+L+PT
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPT 239
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 29.5 bits (63), Expect = 0.79
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPT 380
QGRD++A A++G+GKT + I LQ+I R L+L+PT
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPT 239
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 246 ALHQGRDVIAQAQSGTGKTATFSISILQQI 335
A+ +G D + Q+ +G+GKT + + IL +I
Sbjct: 143 AIIKGHDAVIQSYTGSGKTLAYLLPILSEI 172
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 249 LHQGRDVIAQAQSGTGKTATFSISILQQI 335
L GRD+I A++G+GKT F I + +
Sbjct: 148 LLDGRDLIGIAKTGSGKTLAFGIPAIMHV 176
>At1g17270.1 68414.m02103 expressed protein
Length = 564
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 208 FEKPSAIQQRAIMPCIKDAMLS-LKPSQELEKLLLSLYRFYNKSIQA 345
F +AI ++ +K A+L + ++E+E++LLS +R N SI A
Sbjct: 133 FNSSNAISSSVVIDNVKAALLKQISVNKEIEEVLLSPHRTGNYSITA 179
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 249 LHQGRDVIAQAQSGTGKTATFSISILQ 329
L +G+DV+ A++G+GKT F I ++
Sbjct: 123 LLEGKDVLGAARTGSGKTLAFLIPAVE 149
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 151 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 258
TFD ++L E+ I GF+ + IQ +I P ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLE 125
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQI 335
GRD I A++G+GKT F + +L+ I
Sbjct: 433 GRDCIGVAKTGSGKTLGFVLPMLRHI 458
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 19 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 117
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +1
Query: 28 RRSEDWPEDSK---NGPSKDQGSYDGP 99
RR D P + +GPS+ +G YDGP
Sbjct: 265 RRGYDGPPQGRGGYDGPSQGRGGYDGP 291
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQI 335
G+DVI A++G+GKT + I+ Q+
Sbjct: 117 GKDVIVAAETGSGKTHGYLAPIIDQL 142
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQI 335
GRD I A++G+GKT F + +L+ I
Sbjct: 566 GRDCIGVAKTGSGKTLGFVLPMLRHI 591
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 249 LHQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPT 380
L G DV+ A++G+GKT F ++ +L ++ + R L++ PT
Sbjct: 188 LMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPT 235
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 27.5 bits (58), Expect = 3.2
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSI---SILQQIDTSIRECQA-LILAPT 380
Q RD++A A++G+GKT + I LQ+I R L+L+PT
Sbjct: 265 QNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPT 310
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 27.5 bits (58), Expect = 3.2
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRE-CQALILAPT 380
Q RD++A A++G+GKT + I +L+ R LILAPT
Sbjct: 471 QSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPT 516
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 27.5 bits (58), Expect = 3.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQI 335
GRDV+ A +GTGKT + ++ +
Sbjct: 67 GRDVLVNAPTGTGKTIAYLAPLIHHL 92
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
helicase, putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 240 NNALHQGRDVIAQAQSGTGKTATFSISILQQID 338
+ AL + +++ A +G GKT ++ILQQ++
Sbjct: 514 DTALFKAENILLCAPTGAGKTNVAMLTILQQLE 546
>At4g30790.1 68417.m04362 expressed protein
Length = 1148
Score = 26.6 bits (56), Expect = 5.6
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 142 LDPSRCQVSQGPFPEVH-RNYLDPSMAHFWNPLANLLTFFQTNKTCFN 2
L P + GP EVH +N+L P M +N ++ LL F + K N
Sbjct: 337 LRPHDAVSALGPMYEVHDKNHL-PKMQACYNSISELLDFCKNKKNEMN 383
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 1 G*NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPP 102
G N S+++ + WP + +G GSY P
Sbjct: 1171 GHNSSFNNSHNNRQWPYSNSHGYDHGSGSYAAHP 1204
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 231 ATRNNALHQGRDVIAQAQSGTGKTATFSISILQQI 335
AT + L G+D + +A++GTGK+ F + ++ +
Sbjct: 404 ATLSECL-DGKDALVKAKTGTGKSMAFLLPAIETV 437
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 231 ATRNNALHQGRDVIAQAQSGTGKTATFSISILQQI 335
AT + L G+D + +A++GTGK+ F + ++ +
Sbjct: 357 ATLSECL-DGKDALVKAKTGTGKSMAFLLPAIETV 390
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 26.6 bits (56), Expect = 5.6
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +3
Query: 255 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPT 380
+GRD+I A++G+GKT ++ + + ++ L+LAPT
Sbjct: 135 KGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPT 181
>At5g60600.2 68418.m07603 1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase, putative / GcpE family protein
similar to GcpE [Plasmodium falciparum] GI:13094969;
contains Pfam profile PF04551: GcpE protein; supporting
cDNA gi|27462471|gb|AF434673.1
Length = 740
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 157 RRFRQLDPSRCQVSQG-PFPEVHRNYLD 77
RR L ++ QG PF E HR+Y D
Sbjct: 357 RRLANLGTKAAKLQQGAPFEEKHRHYFD 384
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 258 GRDVIAQAQSGTGKTATFSISILQQI 335
G+ I QSG+GKT + + ++Q++
Sbjct: 411 GKSCIIADQSGSGKTLAYLVPVIQRL 436
>At1g14420.1 68414.m01710 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 459
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +2
Query: 32 GQKIGQRIPKMGHRRIKVVTMDLREWTL----GHLTPT 133
G+++ QR+P+ + I VV D W + G++ PT
Sbjct: 325 GKRLEQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMNPT 362
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,807,958
Number of Sequences: 28952
Number of extensions: 184071
Number of successful extensions: 639
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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