Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30558X
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz...    24   5.0  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    23   6.7  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    23   6.7  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    23   8.8  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    23   8.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    23   8.8  

>SPCC1393.11 |||mitochondrial ribosomal protein subunit
           L20|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 197

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 5   LPPASHRNASSKGKMK 52
           LPPA  R + SKGK++
Sbjct: 90  LPPAVSRKSKSKGKLR 105


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 65  TQEDPSSCLSMMRFY 21
           T+ DPS CL ++ FY
Sbjct: 952 TEGDPSYCLVLLNFY 966


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
 Frame = +3

Query: 66  WPS*SRSF-APP-------TLVVCGVGTAGSAPRLLNVQ 158
           WPS SRSF APP       T+V  G+    + PRL  +Q
Sbjct: 283 WPSDSRSFGAPPLDQRKMWTIVEEGLNFHFTQPRLSTIQ 321


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 238 LLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPAVPTPHT 107
           LL  A   S + V   RD+  ++  R++T    G    +P  HT
Sbjct: 710 LLQFATGTSRIPVNGFRDLQGSDGPRKFTIEKAGTPDQLPVAHT 753


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 214 SVLDVFSLRDVPAAELLRR 158
           ++LD+ SL D P  E +RR
Sbjct: 656 NILDIVSLEDTPNFEEIRR 674


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 197  EHIEHGMSESLDEKRYHVGKIARVNDL 277
            EH E  +S++   K Y  G++  V +L
Sbjct: 1645 EHAESSLSKAERSKNYLTGRLQEVEEL 1671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,044,277
Number of Sequences: 5004
Number of extensions: 15455
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)