BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30558X (287 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz... 24 5.0 SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 23 6.7 SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 23 6.7 SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 23 8.8 SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 23 8.8 SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 23 8.8 >SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schizosaccharomyces pombe|chr 3|||Manual Length = 197 Score = 23.8 bits (49), Expect = 5.0 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +2 Query: 5 LPPASHRNASSKGKMK 52 LPPA R + SKGK++ Sbjct: 90 LPPAVSRKSKSKGKLR 105 >SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1210 Score = 23.4 bits (48), Expect = 6.7 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = -1 Query: 65 TQEDPSSCLSMMRFY 21 T+ DPS CL ++ FY Sbjct: 952 TEGDPSYCLVLLNFY 966 >SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual Length = 654 Score = 23.4 bits (48), Expect = 6.7 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%) Frame = +3 Query: 66 WPS*SRSF-APP-------TLVVCGVGTAGSAPRLLNVQ 158 WPS SRSF APP T+V G+ + PRL +Q Sbjct: 283 WPSDSRSFGAPPLDQRKMWTIVEEGLNFHFTQPRLSTIQ 321 >SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 2|||Manual Length = 786 Score = 23.0 bits (47), Expect = 8.8 Identities = 13/44 (29%), Positives = 20/44 (45%) Frame = -2 Query: 238 LLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPAVPTPHT 107 LL A S + V RD+ ++ R++T G +P HT Sbjct: 710 LLQFATGTSRIPVNGFRDLQGSDGPRKFTIEKAGTPDQLPVAHT 753 >SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 982 Score = 23.0 bits (47), Expect = 8.8 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -2 Query: 214 SVLDVFSLRDVPAAELLRR 158 ++LD+ SL D P E +RR Sbjct: 656 NILDIVSLEDTPNFEEIRR 674 >SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 2104 Score = 23.0 bits (47), Expect = 8.8 Identities = 9/27 (33%), Positives = 15/27 (55%) Frame = +2 Query: 197 EHIEHGMSESLDEKRYHVGKIARVNDL 277 EH E +S++ K Y G++ V +L Sbjct: 1645 EHAESSLSKAERSKNYLTGRLQEVEEL 1671 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,044,277 Number of Sequences: 5004 Number of extensions: 15455 Number of successful extensions: 43 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 43 length of database: 2,362,478 effective HSP length: 62 effective length of database: 2,052,230 effective search space used: 67723590 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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