Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30558X
         (287 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)                     27   2.5  
SB_53665| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.5  
SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)                      26   4.4  
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.4  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.4  
SB_43260| Best HMM Match : Gemini_mov (HMM E-Value=0.94)               26   5.8  
SB_12769| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00026)         26   5.8  
SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)                     25   7.7  

>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
          Length = 893

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 142 RGADPAVPTPHTTSVG 95
           R A+P++PTPHT   G
Sbjct: 574 RSAEPSIPTPHTMQQG 589


>SB_53665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 187 DVPAAELLRRWTFSSRGADPAVPTP 113
           +V  AE LRRWT +  G+  A P P
Sbjct: 8   NVAVAEWLRRWTRNPMGSSRAGPNP 32


>SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)
          Length = 220

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 161 SEQLGRGDISEAEHIEHGMSESLDEKRYHVGKIARVNDLLNE 286
           S   G  +++E EH E   SE  D+K     K+ +    LN+
Sbjct: 115 SSDSGNSEVTEQEHDEDANSEENDDKPTRKTKLDKAQRKLNK 156


>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 245 GIASRPSSQTFRARCVQPPRCPRGRAAPT 159
           G+ SR  S T RAR   PP  P+  A+P+
Sbjct: 519 GVPSRVGSATSRARQQPPPPPPQRPASPS 547


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 139  GADPAVPTPHTTSVGGANDRDHEGQRKKTL 50
            GA+  +PTP + ++  A++R   G+R K+L
Sbjct: 1293 GAEEVLPTPPSPTLEPASNRKPRGRRLKSL 1322


>SB_43260| Best HMM Match : Gemini_mov (HMM E-Value=0.94)
          Length = 294

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 268 NSGYFAYMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPAVPTPHTT 104
           NS + A  V + V  L  S++ +++ R   AA L R    + +  DP    PH T
Sbjct: 122 NSAWSASSV-IGVAGLLVSLIGLYTRRQELAAALTRTPAVNQQATDPHATNPHAT 175


>SB_12769| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00026)
          Length = 352

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 190 RDVPAAELLRRWTFSSRGADPAVP 119
           R++P ++  RRWT  SR A   +P
Sbjct: 42  REIPTSDTCRRWTHISRIAREMLP 65


>SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)
          Length = 353

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 268 NSGYFAYMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPAVPTPHTT 104
           NS + A MV + V  L  S++ + + R   AA   R    + R  DP    PH T
Sbjct: 254 NSAWSASMV-IGVVGLLVSLIGLHTCRRGLAAAFTRTPAVTQRATDPLATDPHAT 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,497,774
Number of Sequences: 59808
Number of extensions: 138979
Number of successful extensions: 461
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 315872425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)