Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30558X
         (287 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein ...    25   6.6  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein
           related protein 10 protein.
          Length = 1382

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 90  QMTAITRANARRPFILPFDDA 28
           Q  AI RA  R+P +L FD+A
Sbjct: 594 QRVAIARAVIRKPIVLIFDEA 614


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
           protein C46C2.1b protein.
          Length = 1677

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 160 RWTFSSRGADPAVPTPHTTSVGGA 89
           +WT   R  DP   +P T S+  A
Sbjct: 81  KWTSKKRPDDPTTSSPSTVSISNA 104


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
           protein C46C2.1a protein.
          Length = 1838

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 160 RWTFSSRGADPAVPTPHTTSVGGA 89
           +WT   R  DP   +P T S+  A
Sbjct: 81  KWTSKKRPDDPTTSSPSTVSISNA 104


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -2

Query: 178 AAELLRRWTFSSRGADPAVPTPHTTSVGGANDRDHEGQRKKTLHL 44
           AA+LLRR   S     P VPT  +T     N     G  ++T  L
Sbjct: 288 AADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGSIQQTARL 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,065,843
Number of Sequences: 27780
Number of extensions: 94038
Number of successful extensions: 351
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)